Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31410
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0460 + 3404272-3404274,3405198-3405302,3405363-3405447,340...    31   1.4  
06_03_1332 - 29403320-29407804                                         29   4.3  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    29   5.7  
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238...    28   7.5  
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65...    28   9.9  

>01_01_0460 +
           3404272-3404274,3405198-3405302,3405363-3405447,
           3405626-3405680,3405998-3406136,3406215-3406358
          Length = 176

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 651 NSFWNLFFAFSISSLVDFSPSFKPYIIMLLPFLSLSKNSIFFS 523
           NSFW++ FAF+++  + + P  K   ++++P   +     F+S
Sbjct: 42  NSFWSISFAFAVAKCLKYKP-VKKESLLIMPTFGVQLEQHFWS 83


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 110 DTECWKSSSRSKYWNSHHFEKKTEVILRLEFDLKKFIRLQCWHY*SVKQSDVTTD 274
           D + W     SK W S   E      L+L +D   F   QC+ Y ++   D   D
Sbjct: 495 DLDDWMRVLESKEWESQTSENDIMPALKLSYDYLSFHLQQCFTYCALFPEDYKFD 549


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 92  LSVKLSDTECWKSSSRSKYWNSHHFEKKTEVILRLEFD 205
           LS K    + W S   S  WN +  EK+   IL L +D
Sbjct: 308 LSAKEKKHDVWSSILNSMNWNDNEAEKQCLKILALSYD 345


>12_02_1083 -
           25922670-25922867,25922962-25923213,25923674-25923856,
           25923945-25924015,25924058-25924169,25924524-25924583,
           25924665-25924780,25925172-25925244
          Length = 354

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 770 TSVFFHPQVKDKSTGLGXSPCLVFQCDRFYLYR 672
           T VF  PQVK+ +TG   S    ++C  +++YR
Sbjct: 282 TKVFLFPQVKNLATGCCLS---AWECSGYFIYR 311


>04_01_0066 -
           652339-652382,652641-653593,654492-654568,655812-655917,
           656200-656261,656676-656784,657015-657385
          Length = 573

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 539 FLERDKKGNNIIIYGLKEGEKSTRELIENAKNKFQKEL 652
           FL  + K  N    GL +G    RELIE  KN+FQ ++
Sbjct: 470 FLLNNIKHFNRDTNGLLDGLLVHRELIEECKNEFQSDM 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,878
Number of Sequences: 37544
Number of extensions: 314327
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)