Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31410
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14760.1 68417.m02271 M protein repeat-containing protein con...    31   0.67 
At5g27220.1 68418.m03247 protein transport protein-related low s...    29   2.7  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    29   2.7  
At5g57120.1 68418.m07132 expressed protein weak similarity to SP...    29   3.6  
At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    28   6.3  
At4g27700.1 68417.m03982 rhodanese-like domain-containing protei...    28   6.3  

>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
            Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 509  KVENLEKKIEFLERDKKGNNIIIYGLKEG 595
            KVE LEKK+E  E++ +G N ++  L+EG
Sbjct: 1074 KVETLEKKLEGKEKESQGLNKMLENLQEG 1102


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +2

Query: 509 KVENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKFQKELNLVLE 667
           K + LE+    LER +   N+++  L++ +  +REL E  + K +KEL  VL+
Sbjct: 303 KGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERK-RKELTAVLD 354


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 509 KVENLEKKIEFLERDKKGNNIIIYGLKEGEKSTRELIENAKNKFQKEL 652
           K+  LEKKI++ E +KK     +  L++ E++  E I+  K +  K +
Sbjct: 729 KISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIKPELSKAI 776


>At5g57120.1 68418.m07132 expressed protein weak similarity to
           SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
          Length = 330

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 509 KVENLEKKIEFLERDK--KGNNIIIYGLKEGEKSTRELIENAKNKFQKELNLVLED 670
           K +N E K+E  E +K  + + +I  G+KE +K     ++  + +  KE + V+ED
Sbjct: 94  KKKNKETKVEVTEEEKVKETDAVIEDGVKEKKKKKETKVKVTEEEKVKETDAVIED 149


>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 131 SSRSKYWNSHHFEKKTEVILRLEFDLKKFIRLQCWHY*SVKQSDVTTDIDGY 286
           S++++ W    F+K+   +  LE  +    R +C    ++K  D+T D+ G+
Sbjct: 191 STKTQTWKPVPFQKRIFGVGDLEGKIYTICRTECGQGVTIKPKDLTCDVVGF 242


>At4g27700.1 68417.m03982 rhodanese-like domain-containing protein
           contains rhodanese-like domain PF00581
          Length = 224

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 596 EKSTRELIENAKNKFQKELNLVLEDYDINKIYRIGKPNKATNRDLY 733
           EK  R +      + QKE N V+ D      Y+ G P  A N ++Y
Sbjct: 71  EKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMY 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,780
Number of Sequences: 28952
Number of extensions: 292088
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)