Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31409
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 24 1.0
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 28 1.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 28 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 3.5
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 27 3.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 4.6
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 25 8.1
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 8.1
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 8.1
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 8.1
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 22 TLEKSSALFVDERMIVQEKFQLDVQKTGVC 111
++ + FV+ R I E++QL +G C
Sbjct: 137 SIRDNGGTFVNLRSIFTEQYQLSASDSGAC 166
Score = 23.0 bits (47), Expect(2) = 1.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 106 VCGVKVLSFDDTISSAATINQYVNEVTHSTIEEIVIPSDLEGVIL 240
VC +L+ D S IN Y T + +++ D++ ++L
Sbjct: 199 VCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIMVILSHDMQHILL 243
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 163 NQYVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPY 294
+ Y+ E+ + ++ +I L+G I+ L +A YFKG Q+ Y
Sbjct: 442 DNYILEI-EAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -2
Query: 227 SRSDGITISSMVEWVTSLTYWLMVAAEEIVSSKDRTLT----PQTPVFCTSNWNFSCTI- 63
SR + + + + TYW++ E ++K RT QT C S NFS +
Sbjct: 783 SRDSRSAVRNYINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMS 842
Query: 62 ILSSTNKAELF 30
I+S+ N A ++
Sbjct: 843 IVSALNSAPIY 853
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -2
Query: 254 ASINTRITPSRSDGITISSMVEWVTSLTYWLMVAAEEIVSSKDRTLTPQT-PVFCTSNWN 78
+S ++ + S S ISS +S T + SS T T T +S+ +
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
Query: 77 FSCTIILSSTNKAELFSSVPTAVS 6
FS T+ SS + + FSS PT+ S
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSS 340
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 127 SFDDTISSAATINQYVNEVTHSTIEEI 207
S DD +SS I+ + N++TH T+ +
Sbjct: 430 SLDDHLSSKKPISYFSNKLTHQTLPNV 456
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 466 PHNDVTVSTVIQEMKSISLAAILDSFHGAHS----VAVQIPRFKVTSDINNLKELLIDMG 633
P N VT + + S+S AIL+ FHGA S A Q R V+S +NL+ L ++
Sbjct: 448 PSNVVTDAFELPTPDSLSPMAILEYFHGALSRLFDYAPQFERSIVSS--SNLQNLTLENV 505
Query: 634 LITMFD 651
T++D
Sbjct: 506 DNTVWD 511
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 203 SSMVEWVTSLTYWLMVAAEEIVSSKDRTLTPQTPVFCTSNW 81
S+ VE+VTSLTY M I++ K + P TP W
Sbjct: 322 STTVEFVTSLTYPEM----RIINKKHQGFIPSTPAEFRECW 358
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 169 YVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPYDDTEPSAFYNHQGNQ 339
Y+ + + + + S EGVI + I G W+++ A Y ++GNQ
Sbjct: 103 YITDASPESQNLFLSKSKEEGVIFLCIQIKKLLGKWESKLKIIKFNKLAKYVYEGNQ 159
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 75 EIPVGRAENWCLWGQSS 125
++PVG A++W LW S
Sbjct: 171 DVPVGTADSWNLWAGGS 187
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/66 (19%), Positives = 29/66 (43%)
Frame = +1
Query: 232 VILVLIDALYFKGAWKTQFPYDDTEPSAFYNHQGNQIGDVNLMFVTGSFNLSRIDQLKSS 411
+ +++ LY+KG W + Y S+ ++H G ++ SFN ++ +
Sbjct: 417 IFWIVVPILYYKGVWFSN--YLPMLSSSTFDHTGVSYNSSRVLNSDYSFNHTKYESYSPL 474
Query: 412 VLELPY 429
+ + Y
Sbjct: 475 YMPMSY 480
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -2
Query: 260 YRASINTRITPSRSDGITISSMVEWVTSLTYWLMVAAEEIVSSKDRTLTPQTPVFCTSNW 81
+ +S T I + TISS++ +TS Y + ++ S + + ++NW
Sbjct: 210 HNSSTKTTINRRKKAIGTISSLLSKITSSCYVAIFVTTQMTSKVVSGIGAKLIPLLSTNW 269
Query: 80 --NFSCTIILSSTNKAE 36
N S +IL S + E
Sbjct: 270 LDNLSYRLILYSRHSTE 286
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 94 QKTGVCGVKVLSFDDTISSAATINQYVNEVTHSTIEEIVIPSDLEG 231
QK GVK+ + T A+ I +YV + HS + + + D+ G
Sbjct: 19 QKRLCRGVKLNKLEATSLIASQIQEYVRDGNHSVADLMSLGKDMLG 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,584
Number of Sequences: 5004
Number of extensions: 62112
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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