Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31409
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 90 1e-18
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 76 3e-14
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 75 8e-14
SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13) 30 2.1
SB_6087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0) 29 4.9
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 4.9
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 29 4.9
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39) 28 6.5
SB_12602| Best HMM Match : TFIIB (HMM E-Value=0) 28 6.5
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 28 8.6
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 90.2 bits (214), Expect = 1e-18
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 4/227 (1%)
Frame = +1
Query: 13 AVGTLEKSSALFVDERMIVQEKFQLDVQKTGVCGVKVLSFDDTISSAAT-INQYVNEVTH 189
A + ++ LF+ + + ++F QK + ++ + A +NQ+V E T
Sbjct: 46 ATNEMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTK 105
Query: 190 STIEEIVIPSDLEGVI-LVLIDALYFKGAWKTQFPYDDTEPSAFYNHQGNQIGDVNLMFV 366
I +++ P + L L++A+YFKG W F + + S F N++ +V +MF
Sbjct: 106 KKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMMFQ 164
Query: 367 TGSFNLSRIDQLKSSVLELPYGNDGRFSMLIFRPHNDVTVSTVIQEMKSISLAAILDSFH 546
F D+ K +LELPY D + SM++ P ++ Q++ + I +S
Sbjct: 165 KSKFKYLHSDKYKCKLLELPY-VDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVS 223
Query: 547 GAH--SVAVQIPRFKVTSDINNLKELLIDMGLITMFDSDRASFSDLS 681
V V IP+FK+TS+ L E L ++G+ MFD A F+ +S
Sbjct: 224 SQRPADVEVYIPKFKMTSEF-KLNEALQELGMKKMFDQAAADFTGIS 269
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 75.8 bits (178), Expect = 3e-14
Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Frame = +1
Query: 160 INQYVNEVTHSTIEEIVIPSDLEGVI-LVLIDALYFKGAWKTQFPYDDTEPSAFYNHQGN 336
+N +V++ T I+E++ + + L++++A+YFKG WK +F ++T +AF+ + +
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESH 160
Query: 337 QIG-DVNLMFVTGSFNLSRIDQLKSSVLELPYGNDGRFSMLIFRPHNDVTVSTVIQEMKS 513
+ +V +M N +K V+ELPY D +M+I P S + KS
Sbjct: 161 ESKIEVEMMTRKMKVNFYYDADIKCRVVELPYSGDDT-AMVIILPEEP---SGIFSLEKS 216
Query: 514 ISLAAILDSFHGA---HSVAVQIPRFKVTSDINNLKELLIDMGLITMFDSDRASFSDLSD 684
I + I++ + +V V IP+F+++ + L+ LL D+G+ +FDS +A S +S
Sbjct: 217 IDV-EIMEKWRRLMINTTVEVSIPKFRLSQKL-ELRSLLQDLGVSDIFDSRKADLSGISA 274
Query: 685 YPGLRV 702
GL V
Sbjct: 275 AKGLYV 280
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 74.5 bits (175), Expect = 8e-14
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Frame = +1
Query: 157 TINQYVNEVTHSTIEEIVIPSDL--EGVILVLIDALYFKGAWKTQFPYDDTEPSAFYNHQ 330
T+N++V + T I+ + IP + + IL L++A+YFKG+W F + T+ F
Sbjct: 132 TVNRWVEQKTKDKIKNL-IPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTP 190
Query: 331 GNQIGDVNLMFVTGSFNLSRIDQLKSSVLELPYGNDGRFSMLIFRPHNDVTVSTVIQEMK 510
+I V M+ + F L ++ELPY + + SM++ P+ + + +
Sbjct: 191 SQEI-QVQFMYQSSEFRYLESSTLGCQIVELPYAGE-KLSMVVLLPNEVDGLGKLESSLN 248
Query: 511 SISLAAILDSFHGAH--SVAVQIPRFKVTSDINNLKELLIDMGLITMFDSDRASFSDLSD 684
+L + S +H V V +P+F +T + +L E L MG +F +A S +S
Sbjct: 249 KETLQEAMTSLRNSHPEEVEVTLPKFTLTQEF-SLGETLKGMGASDLFSPGKADLSGISA 307
Query: 685 YP 690
P
Sbjct: 308 AP 309
>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
Length = 901
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 430 GNDGRFSMLIFRPHNDVTVSTVIQEMKSI-SLAAILDSFHGAHSVAVQIPRFKVTSDINN 606
GND RF + +PH ++ T+ + +K + + + I+ + + AHS + T++I +
Sbjct: 800 GNDSRFLISFQKPHKPISTDTIGRWLKKVLAKSGIIINKYSAHSTRSESMSAGKTANI-S 858
Query: 607 LKELLIDMG 633
+K ++ G
Sbjct: 859 IKTIMAAAG 867
>SB_6087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 430 GNDGRFSMLIFRPHNDVTVSTVIQEMKSI-SLAAILDSFHGAHS 558
GND RF M +PH ++ T+ + +K + + + I + + AHS
Sbjct: 57 GNDSRFLMSFQKPHKPISTDTIGRWLKKVLAKSGININKYSAHS 100
>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Frame = +1
Query: 25 LEKSSALFVDERMIVQEKFQLDVQKTGVCGVKVLSFDDTISSAAT--INQYVNEVTHSTI 198
L+ + + +M ++KF+ QK VKV +D + S ++ +NE+ H +
Sbjct: 6 LQVADMMASTSKMKKKKKFRAVSQK-----VKVFRSNDPLLSVFMWGVSHTINELAHVNV 60
Query: 199 EEIVIPSDLEGVILVLID-ALYFKGAWKTQFPYDDTEPSAFYN 324
+++P D + V +D L+ K + F + + P F N
Sbjct: 61 PVMLMPDDFKAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRN 103
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 34 SSALFVDERMI-VQEKFQL---DVQKTGVCGVKVLSFDDTISSAATINQYVNEVTHSTI 198
++ LFVD+ +I V Q V T G VL DD++ S + Q+VN + STI
Sbjct: 950 NAVLFVDDSVISVSNSVQFVNYSVLSTIFVGNSVLFLDDSVISVSNSVQFVNYLVLSTI 1008
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 34 SSALFVDERMI-VQEKFQL---DVQKTGVCGVKVLSFDDTISSAATINQYVNEVTHSTI 198
+S LFVD+ +I V Q V T G VL DD++ S + Q+VN STI
Sbjct: 919 NSVLFVDDSVISVSNSVQFVNYSVLSTIFVGNAVLFVDDSVISVSNSVQFVNYSVLSTI 977
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 34 SSALFVDERMI-VQEKFQL---DVQKTGVCGVKVLSFDDTISSAATINQYVNEVTHSTI 198
++ LFVD+ +I V Q V T G VL DD++ S + Q+VN + STI
Sbjct: 497 NAVLFVDDSVISVSNSVQFVNYSVLSTIFVGNSVLFLDDSVISVSNSVQFVNYLVLSTI 555
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 34 SSALFVDERMI-VQEKFQL---DVQKTGVCGVKVLSFDDTISSAATINQYVNEVTHSTI 198
+S LFVD+ +I V Q V T G VL DD++ S + Q+VN STI
Sbjct: 466 NSVLFVDDSVISVSNSVQFVNYSVLSTIFVGNAVLFVDDSVISVSNSVQFVNYSVLSTI 524
>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1602
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 ERMIVQEKFQLDVQKTGV-CGVKVLSFDDTISSAATINQYVNEVTHSTIEEIVIPSDLEG 231
E +I + +D+QKT + VK+ D + +AA +VN HS I+++ I L G
Sbjct: 1205 EWVIPDSESYIDLQKTHLRLVVKITKGDGSALAAADKVGFVNNALHSMIKQVTI--YLNG 1262
Query: 232 VILVL 246
I+ L
Sbjct: 1263 KIVTL 1267
>SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
Length = 541
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 286 FPYDDTEPSAF-YNHQGNQIGDVNLMFVTGSFNLSRIDQLKSSV 414
+ Y +T P+ + + H GN + LM+ G R+D + V
Sbjct: 298 YDYMETHPAIYKHTHDGNNTANTGLMYFDGDNQRIRVDIISKGV 341
>SB_12602| Best HMM Match : TFIIB (HMM E-Value=0)
Length = 175
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 472 CAVGRSASRNVHRCRRAILKRL-TSTDRFCS 383
CA+G+ + + + RC + ILK L TS D S
Sbjct: 75 CAIGKISKKEIGRCFKLILKHLETSVDLITS 105
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 585 GNIGHKQLKGAADRHGTDHHV*QRPRQFLR 674
G++GHK+LK R +HH F+R
Sbjct: 292 GDMGHKELKSVVKRSMEEHHAKAASAYFMR 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,131,685
Number of Sequences: 59808
Number of extensions: 495663
Number of successful extensions: 1360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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