Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31408
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0121 - 12722492-12722920                                         29   1.4  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    27   4.3  
05_01_0545 - 4756266-4757510                                           27   5.7  
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561     27   5.7  
06_03_0494 - 21407798-21408142,21408238-21408333,21408854-214096...    26   7.6  
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571     26   7.6  

>01_03_0121 - 12722492-12722920
          Length = 142

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 PQARCGAQAHGGGLQSQKGEQGFHD 197
           P+AR G  A GGG +SQ+   GF D
Sbjct: 80  PEARDGGVATGGGARSQEAGGGFGD 104


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 NVKLLKGGASSRRGAENLRTLTTPT 344
           N K  KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 350 YLRWRRQCS*VFRTSPR*CASFQ-QLYVPAP 261
           Y R  RQC+  +   P  CA+FQ + +VP+P
Sbjct: 352 YQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382


>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
          Length = 268

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28  GPSSNSCSRTP*TNTTTMADDEAKKANQAEIDRKRAV-VRKRMVEASKAK 174
           G   +SC  +P T TTT++ +E+  ++ A   R  +    K  +E ++AK
Sbjct: 150 GGRRSSCGGSPSTTTTTVSSNESGSSSVASTPRGMSCRPAKEALEEARAK 199


>06_03_0494 -
           21407798-21408142,21408238-21408333,21408854-21409670,
           21410211-21410363,21410506-21410744
          Length = 549

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 22  LVGPSSNSCSRTP*TNTTTMADDEAKKANQAEIDRKRAVVRKRMVEASKAKKANKGFM 195
           L GP+    SR P T     AD    +AN+    R  AVV +R     +A++A + F+
Sbjct: 264 LQGPARRLLSRVPAT-----ADWRTARANERLRARVGAVVARRERAGGEARRARRDFL 316


>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
          Length = 498

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 40  NSCSRTP*TNTTTMADDEAKKANQAEIDRKRAVVRKRMVEASKAK 174
           +SC RTP ++ TT     A+    A      A    R++EA  A+
Sbjct: 379 SSCERTPLSSVTTAGSTHARSTGGA-AGETAAAAASRLLEAETAR 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,536
Number of Sequences: 37544
Number of extensions: 79455
Number of successful extensions: 261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)