Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31408
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont...    29   1.2  
At2g37960.1 68415.m04659 expressed protein                             27   4.9  
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    26   6.4  
At1g68880.1 68414.m07883 bZIP transcription factor family protei...    26   6.4  

>At3g17520.1 68416.m02238 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to PIR|S04045|S04045 embryonic
           abundant protein D-29 [Gossypium hirsutum]; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 298

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 64  TNTTTMADDEAKKANQAEIDRKRAVVRKRMVEASKAKK 177
           T+TTT   D+A +A+Q   D K A  RK       AK+
Sbjct: 59  THTTTTVQDDAWRASQKAEDAKEAAKRKAEEAVGAAKE 96


>At2g37960.1 68415.m04659 expressed protein
          Length = 480

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 31  PSSNSCSRTP*TNTTTMADDEAKKANQAEIDRKRAVV 141
           PS+++C RTP    +  +D E    N   + ++R  V
Sbjct: 256 PSNSTCPRTPQQKVSPQSDKEVTPTNCTIVTKERITV 292


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 85  DDEAKKANQAEIDRKRAVVRKRMVEASKAKKANKGFM 195
           D+E KK  + EI RK+   +K   E  + K+ N+  M
Sbjct: 476 DEEKKKKEEEEIKRKKREEKKIKKEEKEEKEENETTM 512


>At1g68880.1 68414.m07883 bZIP transcription factor family protein
           similar to common plant regulatory factor 6 GI:9650826
           from [Petroselinum crispum]; contains Pfam profile:
           PF00170 bZIP transcription factor
          Length = 138

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 52  RTP*TNTTTMADDEAKKANQAEIDRKRAVVRKRMVEASKAKK 177
           R P +N    +DD ++ A   E  R+R V  +     S+ +K
Sbjct: 25  RVPLSNLPATSDDSSRTAEDNERKRRRKVSNRESARRSRMRK 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,246,526
Number of Sequences: 28952
Number of extensions: 55572
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)