Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31406
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 103 3e-23
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 27 3.4
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 27 3.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 6.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 6.0
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 6.0
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 7.9
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 25 7.9
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 103 bits (246), Expect = 3e-23
Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 1/171 (0%)
Frame = +3
Query: 165 GYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKMLIYSSK 344
G+ VL+V+ S A +E+++DFI A+ L+ D LL+++ + + + ++S K
Sbjct: 28 GFRVLKVENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDSSPE-VTLEVFSLK 86
Query: 345 TQSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDY 524
Q R+V I +++ +G+ +++ S A + +WH+L V SP A L P+ DY
Sbjct: 87 GQITRKVNIKINSD----EKIGMVLQWASIAPAVDAIWHILNVIDDSPVARASLVPYEDY 142
Query: 525 IIGS-DSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITPTHNWG 674
I+G+ + ++ + L LIE+H R L+LY+YN D+ R+V I P +WG
Sbjct: 143 IVGTPEGMMTGEKALSDLIESHLNRPLRLYIYNHYRDSTRQVTIVPNRHWG 193
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/122 (28%), Positives = 64/122 (52%)
Frame = +3
Query: 168 YHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKMLIYSSKT 347
+H+L V + SP +A+L + D+I+ + + L +L+++++++P+++ IY+
Sbjct: 120 WHILNVIDDSPVARASLVPYEDYIVGTPEGMMTGEK-ALSDLIESHLNRPLRLYIYNHYR 178
Query: 348 QSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYI 527
S R+V I P+ +WGG G +G C G V H L S P G FS+ +
Sbjct: 179 DSTRQVTIVPNRHWGGNGAIG-----C---GVGHGVLHRLPAPLSGPPPQPGDIVFSNPM 230
Query: 528 IG 533
+G
Sbjct: 231 LG 232
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 561 DLFTLIEAHEGRALKLYVYNANDDTCREVLIT 656
DL L++A + +A+ LY+ + + CRE++ T
Sbjct: 166 DLLGLLDAADYKAIALYITHVYLEVCRELVQT 197
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 682 HPLPQLWVGVMRTSRHVSSFALYTY 608
H +L G+ R + H S F +YTY
Sbjct: 211 HAAVELLAGLARQNLHTSKFGIYTY 235
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 537 DSILHESEDLFTLI--EAHEGRAL--KLYVYNANDDTCREVLIT 656
DS++H SED TL+ H G + ++ V+N D R+V+ +
Sbjct: 258 DSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFS 301
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 628 MIHVVRFS*HQPITGGGDGSLGMWH 702
+I VRF+ + ++GG DG++ +W+
Sbjct: 431 LIRTVRFNDEKIVSGGYDGTVRIWN 455
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 98 LLYEGCLDIVILASSYLSISKYNKHPNFIV 9
++YE L+ +L+ LSI+ +KHP ++
Sbjct: 781 MIYESLLNSSLLSRLLLSIATNDKHPQVLI 810
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 198 VNPLEPVKHDIPQFHLQELQCCVRSPLRSVYHLVIIRGMFGYSYTGLK 55
+ P PV+ + HL ++QCC ++ LR L + + +++ L+
Sbjct: 112 LEPKTPVQTNTNNNHLDDIQCCAKN-LRLRLELAMYKVQVNQTFSPLQ 158
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 204 QKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKM 326
++AN+E D + A E +D L+N +KP+K+
Sbjct: 78 KEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKV 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,809
Number of Sequences: 5004
Number of extensions: 56813
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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