Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31406
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791...    33   0.29 
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    31   0.67 
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579...    31   1.2  
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737...    28   8.3  
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474...    28   8.3  

>03_05_0968 +
           29277122-29277445,29278389-29278505,29278957-29279114,
           29279678-29279727,29279968-29280161,29280867-29281049,
           29281152-29281270,29281383-29281522,29281857-29281937,
           29282286-29282389
          Length = 489

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 150 GGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETT---RLDQDNDTLKELLKNNVDKPI 320
           GGG +G       EG P + A+LE  F+  +A+E      LD+  DTL+EL K    K I
Sbjct: 83  GGGGDGV----AGEGEPEEAASLERRFEEAIAVEGCMHGELDKVYDTLRELEKAEGVK-I 137

Query: 321 KMLIYSSKTQSVR 359
            +L+     Q+VR
Sbjct: 138 DLLLCCGDFQAVR 150


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 471 VHPSSPAELAGLRPFSDYIIGSDSILHES-EDLFTLIEAHEGRALKLYVYNANDDT 635
           V P SPAE AG RP  D ++  D  L ES +++  ++    G   K+ V  AN+ T
Sbjct: 387 VTPGSPAEHAGFRP-GDVVVEFDGKLVESIKEIIDIMGDKVGVPFKVLVKRANNVT 441


>03_02_0131 -
           5796564-5796605,5797188-5797421,5798415-5798717,
           5799260-5799847,5800594-5800749,5800861-5800919,
           5801935-5802262
          Length = 569

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +3

Query: 189 EGSPGQKANLEAFFDFILAIETTRLDQDNDTLK-ELLKNNVDKPIKMLIYSSKTQSVREV 365
           E SP  K   E+F DF+L ++ +  D     ++ +    N+DK +K L  + +       
Sbjct: 145 EESPDDKRIPESFRDFLLEMKDSHYDARTFAVRLKATMENMDKEVKKLRLAEQLYKHYAA 204

Query: 366 MITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSI 545
              P      +G+  +S+R      +N +     ++ P     L     F  YI+ SD+I
Sbjct: 205 TAIP------KGIHCLSLRLTDEYSSNAHARK--QLPPPELLPLLSDNSFQHYILASDNI 256

Query: 546 LHES 557
           L  S
Sbjct: 257 LAAS 260


>10_04_0002 -
           7372425-7372601,7372697-7372780,7372859-7373010,
           7373229-7373324,7373406-7373554,7373723-7373788,
           7373925-7373994,7374106-7374236,7376464-7376471,
           7377946-7378002
          Length = 329

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 420 RFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYI 527
           R   F  A+E +  +L+V P    E  GLRPFSD+I
Sbjct: 131 RTAEFSSADEVINSLLDVRP----EKWGLRPFSDWI 162


>06_03_0940 +
           26145746-26145879,26146740-26146821,26147349-26147427,
           26147527-26147624,26148392-26148479,26148589-26148686,
           26148881-26148982,26149237-26149281,26150535-26150574,
           26150988-26151074,26151254-26151330,26151746-26151808,
           26152650-26152766,26152905-26153116,26153690-26153785,
           26153869-26153935,26154028-26154081
          Length = 512

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 195 SPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPI-KMLIYSSKTQS 353
           SPGQ + +    D +  + T +       LKELL+++V++ + K L+ S KT++
Sbjct: 162 SPGQPSLISDDTDVVALVGTKKDLAKQINLKELLEDSVEERMEKTLLESDKTEA 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,956
Number of Sequences: 37544
Number of extensions: 365085
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)