Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31406
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_41345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=4)             29   2.8  
SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   6.4  
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)                   28   8.4  

>SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 210 LFGRVNPLEPVKHDIPQFHLQELQCCVRSPLRSVYHLVIIRGMFGYSY 67
           L G  NP EP++H +P    ++L   +  PL S  +L+++   +   Y
Sbjct: 715 LVGATNPPEPLRHTVPTQPWKDLAADLMGPLPSREYLLVVVDYYSRYY 762


>SB_41345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=4)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 567 FTLIEAHEGRALKLYV--YNANDDTCREVLITPTHNWGRGW 683
           F+ ++  EG  L++ +   NANDD   +V+ T T NW +G+
Sbjct: 325 FSRMKLREGGPLEVSLSKLNANDDNDDDVIQTHTSNWTQGF 365


>SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 357 REVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGS 536
           R + +T + N GG G    +       G  E +  VL V    PA +AG+RP  D I+  
Sbjct: 388 RTIQMTRN-NEGGFGFTLQTYGIVQQNGEVEFMTFVLAVEEDGPAYMAGMRP-GDIIVSV 445

Query: 537 DSILHESEDLFTLI 578
           ++   E ED   L+
Sbjct: 446 ENRDVEEEDHRVLV 459


>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 177 LRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKML 329
           LRV+ G  G    L   F+ IL     +LDQD +  KE L+ NV+   K +
Sbjct: 435 LRVK-GKDGLSGQLREEFEKILNEHKRKLDQDYEQEKENLRLNVESQRKKI 484


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 213  NLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKMLIYSSKTQ-SVREVMITP 377
            N+  FF +++   T  +   +  + +L +  +D P  + +YS +   S R  M+TP
Sbjct: 1933 NVSVFFKYMIGDRTGMVHIGHQQVLDLHRPEIDLPFSVNVYSERHHTSWRVAMVTP 1988


>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 354 VREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIG 533
           VREV++        +G LG+ +R       N+ ++ V  VH  SPA L GLR F D I+ 
Sbjct: 42  VREVILCKD----NEGKLGLRVR-----AVNKGIF-VAFVHKDSPAALGGLR-FGDQILQ 90

Query: 534 SD 539
            D
Sbjct: 91  ID 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,012,986
Number of Sequences: 59808
Number of extensions: 400573
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)