Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31406
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...   264   4e-71
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical...    29   4.3  
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    28   5.6  

>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score =  264 bits (647), Expect = 4e-71
 Identities = 113/185 (61%), Positives = 151/185 (81%)
 Frame = +3

Query: 120 MGSSHSTEVPGGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLK 299
           MGSS S  +PGGGTEGYHVLRVQE SPG  A LE FFDFI++I   RLD+DNDT+KE+LK
Sbjct: 1   MGSSESVPIPGGGTEGYHVLRVQENSPGAVAGLEPFFDFIVSIGNIRLDKDNDTMKEVLK 60

Query: 300 NNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHP 479
            +++KP+++ +Y+SK+Q+VR+  I PS NWGGQGLLGVSIRFCSF+GA+++VWH++ V P
Sbjct: 61  QHIEKPLEITVYNSKSQAVRQTSIVPSQNWGGQGLLGVSIRFCSFDGASQHVWHIISVQP 120

Query: 480 SSPAELAGLRPFSDYIIGSDSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITP 659
           +SPA LAGL   +DYI+G++S+LH+++DL  L++A+EG+ LKLYVYN + D  REV +TP
Sbjct: 121 NSPASLAGLIADTDYILGAESVLHQADDLIALVQANEGKPLKLYVYNVDTDVVREVSLTP 180

Query: 660 THNWG 674
              WG
Sbjct: 181 NSAWG 185



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/92 (39%), Positives = 54/92 (58%)
 Frame = +3

Query: 150 GGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKML 329
           G     +H++ VQ  SP   A L A  D+IL  E+  L Q +D +  L++ N  KP+K+ 
Sbjct: 107 GASQHVWHIISVQPNSPASLAGLIADTDYILGAESV-LHQADDLIA-LVQANEGKPLKLY 164

Query: 330 IYSSKTQSVREVMITPSANWGGQGLLGVSIRF 425
           +Y+  T  VREV +TP++ WGG+G LG  I +
Sbjct: 165 VYNVDTDVVREVSLTPNSAWGGEGCLGCDIGY 196


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
            protein R02D3.1 protein.
          Length = 934

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/80 (22%), Positives = 39/80 (48%)
 Frame = +3

Query: 141  EVPGGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPI 320
            ++PGG +E + +  VQ G+P   + +     +  AI  + +  +N    E+ +  + +PI
Sbjct: 854  QLPGGNSERHRISLVQYGNPNGFSAMARTVGYTTAI-VSHMVLNN----EIQRAGIQRPI 908

Query: 321  KMLIYSSKTQSVREVMITPS 380
               +Y    + +R+  I P+
Sbjct: 909  LKEVYRPALKRLRDFGIVPT 928


>AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical
           protein W08E12.1 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 645 PHDMYHHLHYIHTT 604
           PHD YHH HY H++
Sbjct: 23  PHDHYHHHHYPHSS 36


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
            protein W02D3.10a protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
 Frame = +3

Query: 252  TTRLDQDNDTLKELLKNNVDKPIKMLIYSSKT-QSVREVMITPSANWGGQ---GLLGVSI 419
            TT+ ++D +  KE  K  +D     ++ S+KT  S+   +I P+ N G       + V  
Sbjct: 841  TTKKEKDKEKEKEE-KITIDSSQSEILTSAKTLSSIMTKLIKPAENDGNSTANATINVRP 899

Query: 420  RFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSILHESEDLFTL 575
               +       VW V      S A +   RP    + G+ S++  S+ L  L
Sbjct: 900  EIVADVQMELLVWVVGRAKVLSSALVKEYRPLHSILSGTSSLISLSKSLIDL 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,218
Number of Sequences: 27780
Number of extensions: 315733
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)