Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31406
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 273 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 440
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 90  SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 140


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 273 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 440
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 106 SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 156


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 273 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 440
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 163 SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 213


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 103 LSYYTRDVWI*LYWPQV 53
           LSY+T+D+ +  Y+ QV
Sbjct: 209 LSYFTQDIGLAAYYAQV 225


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 507 RPFSDYII------GSDSILHESEDLFTLIEAHEGRALKLYVYNANDD 632
           RP  DY +      G D  + ES +L  L+E  +GR     ++  +DD
Sbjct: 19  RPGGDYSLDEIEWDGGDYEVVESRELTNLVEIFDGRGT---IFEGHDD 63


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 408 GVSIRFCSFEGANENVWHV 464
           G  ++FC F  AN   W V
Sbjct: 492 GTKMQFCIFRTANGRGWGV 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,424
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)