Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31406
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05140.1 68414.m00517 membrane-associated zinc metalloproteas...    29   3.9  
At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s...    28   5.2  
At3g28430.1 68416.m03553 expressed protein non-consensus GC dono...    28   5.2  
At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (...    28   5.2  
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi...    28   6.9  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    28   6.9  

>At1g05140.1 68414.m00517 membrane-associated zinc metalloprotease,
           putative similar to Hypothetical zinc metalloprotease
           All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.};
           Similar to Synechocystis hypothetical protein
           (gb|D90908);contains Pfam PF00595: PDZ domain (Also
           known as DHR or GLGF); contains TIGRFAM TIGR00054:
           membrane-associated zinc metalloprotease, putative
          Length = 441

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +3

Query: 231 DFILAIETTRLDQD-NDTLK---ELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQ 398
           D ILA++ T L    +D++    +++K N +  + + I   K     E+ ITP  ++ G 
Sbjct: 227 DVILAVDGTELSNSGSDSVSKVVDVVKRNPEHNVLLRIERGKESF--EIRITPDKSFDGT 284

Query: 399 GLLGVSI 419
           G +GV +
Sbjct: 285 GKIGVQL 291


>At5g51550.1 68418.m06392 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 337

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 462 VLEVHPSSPAELAGLRPFSDYIIGSDSILHESE 560
           VL V  +SPA++ G RP+     GSD I   S+
Sbjct: 12  VLTVFLTSPAQVIGYRPYPPKTNGSDQIFDASK 44


>At3g28430.1 68416.m03553 expressed protein non-consensus GC donor
           splice site at exon 16
          Length = 837

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 513 FSDYIIGSDSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITPTH 665
           F  Y+ G     HE   + T +     RAL L VY+  D++  + +++P H
Sbjct: 163 FPLYVEGIQFAFHEENMIRTAV-----RALTLNVYHVGDESVNDYVVSPPH 208


>At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3
           (RGP3) nearly identical to reversibly glycosylated
           polypeptide-3 [Arabidopsis thaliana] GI:11863238;
           contains non-consensus GA-donor splice site at intron 2
          Length = 362

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 EGYHVLRVQEGSPGQKANLEAFFDFIL 242
           E YH++ VQ+G P +  N+   FD+ L
Sbjct: 39  EQYHLIIVQDGDPSKVINIPVGFDYEL 65


>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 747

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 198 VNPLEPVKHDIPQFHLQELQCCVRSPLRSVYHLVIIRG 85
           +NPL   KHD  + H+Q   C     LR V   ++IRG
Sbjct: 549 LNPLPLKKHDCGRAHIQ--VCSEEEFLRDVMQFLLIRG 584


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 514 NGLRPASSAGDDGCTSNTCHTFSLAPSKEQNLILTPSNPWPP 389
           + L P+ S      + ++    SL+PS    L L+PS+P PP
Sbjct: 79  SSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPP 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,031
Number of Sequences: 28952
Number of extensions: 294625
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)