BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31406 (703 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g05140.1 68414.m00517 membrane-associated zinc metalloproteas... 29 3.9 At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s... 28 5.2 At3g28430.1 68416.m03553 expressed protein non-consensus GC dono... 28 5.2 At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (... 28 5.2 At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 6.9 At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 6.9 >At1g05140.1 68414.m00517 membrane-associated zinc metalloprotease, putative similar to Hypothetical zinc metalloprotease All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.}; Similar to Synechocystis hypothetical protein (gb|D90908);contains Pfam PF00595: PDZ domain (Also known as DHR or GLGF); contains TIGRFAM TIGR00054: membrane-associated zinc metalloprotease, putative Length = 441 Score = 28.7 bits (61), Expect = 3.9 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +3 Query: 231 DFILAIETTRLDQD-NDTLK---ELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQ 398 D ILA++ T L +D++ +++K N + + + I K E+ ITP ++ G Sbjct: 227 DVILAVDGTELSNSGSDSVSKVVDVVKRNPEHNVLLRIERGKESF--EIRITPDKSFDGT 284 Query: 399 GLLGVSI 419 G +GV + Sbjct: 285 GKIGVQL 291 >At5g51550.1 68418.m06392 phosphate-responsive 1 family protein similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region Length = 337 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 462 VLEVHPSSPAELAGLRPFSDYIIGSDSILHESE 560 VL V +SPA++ G RP+ GSD I S+ Sbjct: 12 VLTVFLTSPAQVIGYRPYPPKTNGSDQIFDASK 44 >At3g28430.1 68416.m03553 expressed protein non-consensus GC donor splice site at exon 16 Length = 837 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 513 FSDYIIGSDSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITPTH 665 F Y+ G HE + T + RAL L VY+ D++ + +++P H Sbjct: 163 FPLYVEGIQFAFHEENMIRTAV-----RALTLNVYHVGDESVNDYVVSPPH 208 >At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (RGP3) nearly identical to reversibly glycosylated polypeptide-3 [Arabidopsis thaliana] GI:11863238; contains non-consensus GA-donor splice site at intron 2 Length = 362 Score = 28.3 bits (60), Expect = 5.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 162 EGYHVLRVQEGSPGQKANLEAFFDFIL 242 E YH++ VQ+G P + N+ FD+ L Sbjct: 39 EQYHLIIVQDGDPSKVINIPVGFDYEL 65 >At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 747 Score = 27.9 bits (59), Expect = 6.9 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 198 VNPLEPVKHDIPQFHLQELQCCVRSPLRSVYHLVIIRG 85 +NPL KHD + H+Q C LR V ++IRG Sbjct: 549 LNPLPLKKHDCGRAHIQ--VCSEEEFLRDVMQFLLIRG 584 >At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor family protein low similarity to extensin [Volvox carteri] GI:21992 Length = 312 Score = 27.9 bits (59), Expect = 6.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 514 NGLRPASSAGDDGCTSNTCHTFSLAPSKEQNLILTPSNPWPP 389 + L P+ S + ++ SL+PS L L+PS+P PP Sbjct: 79 SSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPP 120 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,756,031 Number of Sequences: 28952 Number of extensions: 294625 Number of successful extensions: 819 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 797 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 819 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1506636208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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