Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31405
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.97 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.1  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 130  GEFNHFHNIYIKR*LILLNPQ*GPKLFSLYLLGYDLE 20
            G + H    YI + L+L+NP   P     Y L YDL+
Sbjct: 1940 GNYLHLEE-YINKKLLLINPNEEPDSLLFYALAYDLK 1975


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = -1

Query: 569  FNQTIE-STIIKAGNVTFGQLLVNQKNELLTLYSIGSHKTLLNDILD--------K*QVK 417
            +NQT++ +T+I +    F    V + ++ ++L S  +  T L+ IL+        K    
Sbjct: 1081 YNQTLKPATLIDSALDVF-LCFVQKTSKFISLDSFNTILTALSTILNLKELECEPKDHAN 1139

Query: 416  LILYLMQVLNRIL*RRRLY 360
            LIL ++Q+LN +L   R Y
Sbjct: 1140 LILKIIQILNGLLFNHRSY 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,085
Number of Sequences: 5004
Number of extensions: 56483
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)