Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31405
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    29   4.8  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    29   4.8  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   6.4  
U97015-7|AAB52348.1|  299|Caenorhabditis elegans Defective sperm...    28   8.5  
U36483-1|AAA97861.1|  299|Caenorhabditis elegans SPE-11 protein.       28   8.5  

>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 321 CPNAQIATFDNRQLNYKCIMLDKC 250
           CP    A+F+N+ LN K   L KC
Sbjct: 48  CPRGNCASFENKNLNCKQCRLKKC 71


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 321 CPNAQIATFDNRQLNYKCIMLDKC 250
           CP    A+F+N+ LN K   L KC
Sbjct: 48  CPRGNCASFENKNLNCKQCRLKKC 71


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 337  YVNTDCFEYNRLLQRIRFKTCIK*SINLTCYLSKMSFRRVL*LPMEYK 480
            Y+N +  +Y + + R+  K+  +    L CY ++  ++ +L LP+ Y+
Sbjct: 3901 YINPEHLDYFKFVGRLIAKSVFEHKY-LDCYFTRAFYKHILNLPVRYQ 3947


>U97015-7|AAB52348.1|  299|Caenorhabditis elegans Defective
           spermatogenesis protein11 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 656 INQN*FRLAKIVCVHCSFI-KHIASSNYTNFNQTIESTIIKAGNVTFGQLLVNQKNE 489
           +N+  F   K   ++  +  K+++      F  T+E+ + KAGN T  Q++ +  +E
Sbjct: 126 VNEGFFNCGKGAAMNIRYNDKNVSKKGAKKFVATVETAMKKAGNPTMEQMMTDDLDE 182


>U36483-1|AAA97861.1|  299|Caenorhabditis elegans SPE-11 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 656 INQN*FRLAKIVCVHCSFI-KHIASSNYTNFNQTIESTIIKAGNVTFGQLLVNQKNE 489
           +N+  F   K   ++  +  K+++      F  T+E+ + KAGN T  Q++ +  +E
Sbjct: 126 VNEGFFNCGKGAAMNIRYNDKNVSKKGAKKFVATVETAMKKAGNPTMEQMMTDDLDE 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,772
Number of Sequences: 27780
Number of extensions: 306810
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)