Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31404
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550...    30   1.6  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    28   6.3  
07_01_0589 - 4381188-4381433,4381509-4381604,4381673-4381858,438...    28   6.3  

>12_01_0650 +
           5500662-5501206,5502485-5502563,5503100-5503308,
           5504396-5505146
          Length = 527

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 462 LVPEAKAELKIVQNFPLKEVYVLLSILNLSFVGIE--NFHFFIHSGSEFDIIM*CIFDFC 289
           L+P+   E K  Q+  + E Y L+ +   SFV ++  NFHF  + G E+ ++   I+D  
Sbjct: 385 LIPQTTGEAKRTQD--VGEEY-LIQLSRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLA 441

Query: 288 T 286
           T
Sbjct: 442 T 442


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 233 ALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCMKK 349
           A HN L NH++ H     +  +K H+    ++LP    K
Sbjct: 87  AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>07_01_0589 -
           4381188-4381433,4381509-4381604,4381673-4381858,
           4382704-4382825,4384127-4384189,4384777-4384930,
           4387354-4387381,4387784-4387837,4387950-4388294,
           4388382-4388638
          Length = 516

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 283 MCTEVKNTLHNYVKLTPAVYEKVEILNS 366
           MC ++   +H++  LTPA+Y  +E  NS
Sbjct: 464 MCGQLALCIHDFTFLTPALYRGLEASNS 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,126
Number of Sequences: 37544
Number of extensions: 294346
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)