Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31404
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32660.1 68415.m03992 disease resistance family protein / LRR...    28   5.3  
At4g20095.1 68417.m02939 hypothetical protein contains Pfam prof...    27   9.2  
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con...    27   9.2  

>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KIHYI-IMSNSLPLCMKKWKFSIPTKLKFKIDNKTYTSFNG 418
           K+ Y+ + SN +   +  W +S+P  +   + N ++T FNG
Sbjct: 123 KLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSFTGFNG 163


>At4g20095.1 68417.m02939 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 249

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +2

Query: 266 LHLIA*CVQKSKIHYIIMSNSLPLCMKK----WKFSIPTKLKFKIDNKT-YTSF 412
           LHL A     SK+H   + ++ P  MKK     K ++ +K K K +N   YTSF
Sbjct: 165 LHLYAELALFSKLHAHALESAKPFEMKKIVVRTKANVESKKKVKAENAIFYTSF 218


>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
           contains Pfam profile PF00787: PX domain
          Length = 938

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 426 QNFPLKEVYVLLSILNLSFVGIENFHFFIHSGS 328
           +NF L    V LS L++S +G    HFF   GS
Sbjct: 56  ENFSLGPSLVKLSSLDMSRLGDRGIHFFDEGGS 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,728
Number of Sequences: 28952
Number of extensions: 261195
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)