Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31403
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.34
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.59
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.0
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 1.8
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 4.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 4.1
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 5.5
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 5.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.5
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 329 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 496
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 389 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 559
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 560 LQKKAAEF 583
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 371 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 544
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 338 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 457
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 618 FFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSV 517
FFF T +L KLNS ++ L+++L SV
Sbjct: 148 FFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSV 181
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 207 KPFFAFLALEASSMRLRTSARLRSISACL 121
K FF L E+ +RL+T+ + S+ CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 359 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 490
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 436 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 314
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 389 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 487
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 407 RLEDEKFDLE-YIVKRKDME-ISDLNSQVNDLRGKFV 511
+LEDEKFD E Y+ D E I ++ + D G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,335
Number of Sequences: 5004
Number of extensions: 33078
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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