Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31403
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.84 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 636 LPKVNSFFFTTFNWLRKLNSAAFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 466
           LPKV   + T  +W   ++   F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 298 LPKVR--YATALDWFLLMS---FGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 VNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWN 437
           + +  +  P   LL GF ++T + +  ++  N  WN
Sbjct: 13  IGVLLMLAPINALLLGFVQSTPDNNKTVREFNVYWN 48


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 648 LCLPLPKVNS 619
           LCLP P++NS
Sbjct: 46  LCLPAPRINS 55


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 648 LCLPLPKVNS 619
           LCLP P++NS
Sbjct: 46  LCLPAPRINS 55


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/62 (19%), Positives = 26/62 (41%)
 Frame = +1

Query: 463 DLRPELPSQRPQRQIRQAHTKEGFQIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGKRK 642
           + +P++  QR ++      T+     +  + + P  G+R +    IE   +   +    K
Sbjct: 178 EYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTK 237

Query: 643 TK 648
           TK
Sbjct: 238 TK 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,281
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)