Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31402
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   4.6  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   6.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  

>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 655 GITSLHNRLTVPSQSNRQTVTLFPHNTRQSRS 560
           GITS  NR  + S +  +T    P+ TR++RS
Sbjct: 193 GITSTKNRYVIRSLNVDETGKTIPNITRENRS 224


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 282 WVQRMALSCSRLHGNTSCLFVLSL 211
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -2

Query: 288  AAWVQRMALSCSRLHGN---TSCLFVLSLAVLRAVQAELHQCHHRRDLQILPLG 136
            A+W +R   SCS++        C F      L  +     +C H+   + L LG
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVECFFKYKKDALHTLLPGFMRCFHKVAKEFLSLG 2144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,107
Number of Sequences: 5004
Number of extensions: 57128
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)