Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31402
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.2
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 30 1.6
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 30 1.6
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.6
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 30 2.1
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 29 3.6
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 29 3.6
10_01_0036 + 427678-428029,431043-431968 29 4.8
06_01_0866 + 6582131-6583294 28 8.3
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 8.3
01_06_0926 + 33075575-33076618 28 8.3
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 484 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 591
G + V+ + + G S Y+ P N SY+ +V CV +
Sbjct: 590 GALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRL 625
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 367 SSEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 197
SSE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 34 SSEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 612 RTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARID 511
R DK S T H SLV+ ++G+NY + R+D
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 313 VRLVTAATGSMGPADGALLLSPSRKHFL 230
VR V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 484 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 591
G + ++ + + G S Y+ P N SY+ +V CV +
Sbjct: 592 GALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRL 627
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +3
Query: 186 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 353
PL VL GS+ R R RR PS+ P P AA + R PHT S +T
Sbjct: 38 PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 123 LTLFCLAEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAV 302
L + C +E S D FC +G+R V P R S P+A P+ AA
Sbjct: 84 LNVSCASEASNDSFCSRASTGRIGRRPVGPPGVGAAHALRRAAGSAGPPAARPVARKAAA 143
Query: 303 T 305
+
Sbjct: 144 S 144
>10_01_0036 + 427678-428029,431043-431968
Length = 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 410 KLLQLNCWLCSTAAELRI*GN**WVGMWNSARGASSHRRYRQHGSSGWRSPALAFT 243
+LL W C TAA + + ++ARG RR+ H G+ S ALA+T
Sbjct: 240 ELLAAVLWRCRTAALFYAPHRQVCLYLPSNARGRRMRRRHGVHVPEGYYSNALAYT 295
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 326 NSARGASSHRRYRQHGSSG 270
N A+G+S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 186 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 296
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 274 ADGALLLSPSRK-HFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSAR 137
+D ++LL P+R+ H F+ P P G P +SP +P ++A+
Sbjct: 220 SDSSILLFPNRRNHVGFVIRVELGPPDEPRGDPLLSPVTHTPKSTAQ 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,398
Number of Sequences: 37544
Number of extensions: 395345
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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