Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31402
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0) 30 2.1
SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0) 30 2.1
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 2.8
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 2.8
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 4.9
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 29 4.9
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 29 4.9
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07) 28 8.5
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 524 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNH-----SET*AL*KLLQLNC 390
LP M T +T PK + Q FR +KQ++ H E AL K L+C
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKKEQEEELKALAKKFSLSC 89
>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 1025
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -2
Query: 678 AVTSRTRLV*LHFTTA*RSRHNRTDKL--SLYFHTTHDSLVAFVLKGS---NYIMGTARI 514
+V R ++V A NRT +L ++Y H+ ++ VL+GS G I
Sbjct: 875 SVMHREQIVLSPIEVAIEDMQNRTHELYNAIYSHSPDAKMLQMVLQGSIGTTVNQGPLEI 934
Query: 513 DVVFNHSNASESDQTKVQ 460
+VF HS+ + D+ ++
Sbjct: 935 AIVFLHSDTNADDEPDLE 952
>SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 331
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -2
Query: 678 AVTSRTRLV*LHFTTA*RSRHNRTDKL--SLYFHTTHDSLVAFVLKGS---NYIMGTARI 514
+V R ++V A NRT +L ++Y H+ ++ VL+GS G I
Sbjct: 103 SVMHREQIVLSPIEVAIEDMQNRTHELYNAIYSHSPDAKMLQMVLQGSIGTTVNQGPLEI 162
Query: 513 DVVFNHSNASESDQTKVQ 460
+VF HS+ + D+ ++
Sbjct: 163 AIVFLHSDTNADDEPDLE 180
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -1
Query: 640 HNRLTVPSQSNRQTVTL---FPHNTRQSRSFCFERVQLYNGNCPH 515
HN +T+PSQ N T+T+ + HNT S C H
Sbjct: 384 HNTITIPSQYNHNTITIPSQYHHNTNTIPSQYHHNTITIPSQCHH 428
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -1
Query: 640 HNRLTVPSQSNRQTVTL---FPHNT 575
HN +T+PSQ +R T+T+ + HNT
Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNT 276
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 259 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 152
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 580 CVEIE*QFVCSIVTGPLGG-CEVKLYQPSAGSDCPSRLSISPS 705
C E+ F C+ V G G CE+ L +P DCPSR P+
Sbjct: 1237 CTELVNGFKCTCVPGYNGTRCEIVL-RPRPPKDCPSRFEGHPN 1278
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 264 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 350
AP+ P P AA R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 267 PSAGPML-PVAAVTRRTSRTVPHTYPSSVTLNSELR 371
PSAGP + PV+ V T + HTY S + +LR
Sbjct: 2435 PSAGPSVTPVSTVRIETQKKQAHTYGSKKKADGKLR 2470
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 631 LTVPSQSNRQTVTLFPHNTRQSRSFCFERVQLY 533
+T+P +TV + H TR+ R + ER++ Y
Sbjct: 2203 VTIPETDCEETVNEYCHKTREERKYVNERLRRY 2235
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 141 AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 320
+E+S + + G G+ G+ G++ + CFR+ + P+ P P R+T R
Sbjct: 484 SEISRNSYGGCESGLTCGKDGMVIAWDGVG--CFRDLRPSKTPTTEPQRPETTTKRKTQR 541
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 141 AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 320
+E+S + + G G+ G+ G++ + CFR+ + P+ P P R+T R
Sbjct: 849 SEISRNSYGGCESGLTCGKDGMVIAWDGLG--CFRDLRPSKTPTTEPQRPKTTTKRKTQR 906
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 307 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 185
LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
Length = 651
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 343 HQLP*IRSSAAVEHSQQFSC 402
H LP I S++ V+HS+QF C
Sbjct: 292 HSLPEISSNSLVKHSKQFFC 311
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -1
Query: 310 RLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQN 131
RL+ +TG+ G A + S + KH P S P P PS +G P ++
Sbjct: 262 RLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPK--PSTPSSEGMPPAGRKEP 315
Query: 130 KV 125
+
Sbjct: 316 SI 317
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 361 RSSAAVEHSQQFSCRSF*RAYVSE*FNLICFHILNFCLIAFGCVRVVENDINAGSSHYII 540
R S V + C S+ R + S + ++C H + C +A G V V + + +H ++
Sbjct: 463 RKSCVVFSYSRVFCSSWCRVFCSSWYRVMCSHAV-VCSVAHGAVCSVAHAVVCSVAHGVV 521
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,639,809
Number of Sequences: 59808
Number of extensions: 460883
Number of successful extensions: 1252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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