Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31402
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    35   0.065
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    35   0.065
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 280 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 140
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 280 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 140
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 189


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 217 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKV 125
           E GS+P+  + T    P+K S D +A +N+V
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQV 74


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 585 GNRVTVCLFDCDGTVRRL*SEV 650
           G++VT CLFD +GT  RL S++
Sbjct: 305 GSKVTTCLFDPNGTGGRLWSDL 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,912,789
Number of Sequences: 27780
Number of extensions: 346955
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)