Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31401
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    32   0.32 
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    32   0.32 
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 27/122 (22%), Positives = 46/122 (37%)
 Frame = +3

Query: 186 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 365
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 366 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTMQKKS 545
                                  EEK+++ EE  KK Q M+       + G NF +QKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 546 EN 551
           E+
Sbjct: 165 ES 166


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 27/122 (22%), Positives = 46/122 (37%)
 Frame = +3

Query: 186 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 365
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 366 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTMQKKS 545
                                  EEK+++ EE  KK Q M+       + G NF +QKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 546 EN 551
           E+
Sbjct: 165 ES 166


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 312
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = +3

Query: 432 IEEKRQRLEEAEKKRQ 479
           +EEK++RL+EA+KKR+
Sbjct: 543 LEEKKRRLQEAKKKRR 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,631,053
Number of Sequences: 27780
Number of extensions: 121271
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)