Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31401
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             32   0.29 
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   1.6  
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR...    29   2.7  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    28   4.8  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    27   6.3  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    27   8.3  
At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almo...    27   8.3  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 281
           K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 21  KDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 PKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEW 269
           PK+E EG+ E +  + +K     +++KE  +EW
Sbjct: 232 PKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTMQKKSE 548
           D  EKRQ L EAE+ R  +       S  G +F M K SE
Sbjct: 502 DEPEKRQFLVEAEEIRDVLANETGTGSVLGISFDMSKVSE 541


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 202 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 324
           +S+ +TRSGR +++    +ST   NS  R   SS   K  R
Sbjct: 103 NSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 432  IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTMQKK 542
            +E+K+++LEE EKK Q + +++    +   N   + K
Sbjct: 1018 LEDKKKKLEETEKKGQQLQESLTRMEEKCSNLESENK 1054


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 168 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWR 272
           +PK   E +PE  K  D+K    +E   E+I+ W+
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWK 216


>At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almost
           idential to SKP1 interacting partner 4 GI:10716953 from
           [Arabidopsis thaliana], 42 aa extension at N-terminal;
           contains Pfam profiles PF01344: Kelch motif, PF00646:
           F-box domain
          Length = 358

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 117 IPPRQTCWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 4
           +PP  T   +  C T   + ++   L L P A+R W++
Sbjct: 154 VPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDI 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,216,310
Number of Sequences: 28952
Number of extensions: 117769
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)