Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31396
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             206   1e-53
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         31   0.38 
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         29   1.5  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         29   2.7  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   4.6  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  206 bits (502), Expect = 1e-53
 Identities = 96/147 (65%), Positives = 118/147 (80%), Gaps = 16/147 (10%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------RQAIEGTYI 136
           +A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            R+AIEGTYI
Sbjct: 7   RAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYI 66

Query: 137 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPC 316
           DKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPC
Sbjct: 67  DKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPC 126

Query: 317 FRDVEIGDIVTIGECXPLSKTVRFNVL 397
           FRD+ +GD++T+G+C PLSKTVRFNVL
Sbjct: 127 FRDIALGDLITVGQCRPLSKTVRFNVL 153


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 335 GDIVTIGECXPLSKTVRFNV 394
           GD+V I EC PLSK  +FNV
Sbjct: 29  GDVVRIKECRPLSKMKKFNV 48


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +2

Query: 155 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 334
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 335 GDIVTIGECXPLSKTVRFNVL 397
           GD V I E  PLS T R+ ++
Sbjct: 63  GDRVRIMETRPLSATKRWRLV 83


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPRQAIEGTYIDKK-CPFTGNVSIRGR 181
           +A   + T  ++RK   K+K+ +  KN+    K PR+    T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 182 ILTGVVQK 205
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 328 HVPEARRQMHGHIPVPFLEP 269
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 182 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 319
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 137 QCRYPQSPVWEF*SLNQHSYGDACP 63
           +C   QS +WE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,164
Number of Sequences: 59808
Number of extensions: 276089
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)