Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31396
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   184   3e-47
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           179   1e-45
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           175   1e-44
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    35   0.025
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    34   0.044
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.54 
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    28   3.8  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.0  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  184 bits (448), Expect = 3e-47
 Identities = 90/136 (66%), Positives = 104/136 (76%), Gaps = 5/136 (3%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPRQAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K   K K       R  KN+GLGFKTPR+AIEGTYID+KCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD VT
Sbjct: 67  IRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVT 125

Query: 350 IGECXPLSKTVRFNVL 397
           IG+C PLSKTVRFNVL
Sbjct: 126 IGQCRPLSKTVRFNVL 141


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  179 bits (435), Expect = 1e-45
 Identities = 86/136 (63%), Positives = 101/136 (74%), Gaps = 5/136 (3%)
 Frame = +2

Query: 5   KAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPRQAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K   K K       R  KN+GLGFKTPR+AI+G Y+DKKCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD + 
Sbjct: 67  IRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHII 125

Query: 350 IGECXPLSKTVRFNVL 397
           IG+C PLSKTVRFNVL
Sbjct: 126 IGQCRPLSKTVRFNVL 141


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  175 bits (426), Expect = 1e-44
 Identities = 87/136 (63%), Positives = 101/136 (74%), Gaps = 5/136 (3%)
 Frame = +2

Query: 5   KAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPRQAIEGTYIDKKCPFTGNVS 169
           KAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPR+AI+G YID KCPFTG VS
Sbjct: 7   KAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVS 66

Query: 170 IRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVT 349
           IRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ GD V 
Sbjct: 67  IRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVI 125

Query: 350 IGECXPLSKTVRFNVL 397
           IG+C PLSKTVRFNVL
Sbjct: 126 IGQCRPLSKTVRFNVL 141


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 191 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECXP 367
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +    P
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 368 LSK 376
           LSK
Sbjct: 63  LSK 65


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 34.3 bits (75), Expect = 0.044
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +2

Query: 179 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 358
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 359 CXPLSK 376
             PLSK
Sbjct: 60  SRPLSK 65


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 32  FLNRKGGMKRKDMRHHKNVGLGFKTPRQAIEGTYIDKKCPFTG 160
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 179 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 358
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 359 CXPLSKTVRFNVL 397
             P+SKT  F  L
Sbjct: 109 SRPISKTKSFVAL 121


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 176 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 292
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,191
Number of Sequences: 28952
Number of extensions: 192536
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)