Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31395
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 636 LPKVNSFFFTTFNWLRKLNSAAFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 466
           LPKV   + T  +W   ++   F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 298 LPKVR--YATALDWFLLMS---FGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/68 (19%), Positives = 29/68 (42%)
 Frame = +1

Query: 463 DLRPELPSQRPQRQIRQAHTKEGFQIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGKRK 642
           + +P++  QR ++      T+     +  + + P  G+R +    IE   +   +    K
Sbjct: 178 EYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTK 237

Query: 643 TKRKSLTG 666
           TK +  +G
Sbjct: 238 TKMRRKSG 245


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -3

Query: 717 CLNLFF----FYLLISPACPSTSQAFSL 646
           C+N+      F+LLIS   PSTS A  L
Sbjct: 270 CINILLSQTMFFLLISEIIPSTSLALPL 297


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +1

Query: 496  QRQIRQAHTKEGFQIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGKRKTKRKSLTGRRA 675
            ++Q   A  ++  Q ++Q +Q  ++ ++ Q     + RE+EG+  G  +T   +   R A
Sbjct: 1200 EQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGA 1259

Query: 676  SR 681
            ++
Sbjct: 1260 AQ 1261


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 VNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWN 437
           + +  +  P   LL GF ++T + +  ++  N  WN
Sbjct: 13  IGVLLMLAPINALLLGFVQSTPDNNKTVREFNVYWN 48


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 648 LCLPLPKVNS 619
           LCLP P++NS
Sbjct: 46  LCLPAPRINS 55


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 648 LCLPLPKVNS 619
           LCLP P++NS
Sbjct: 46  LCLPAPRINS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,619
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)