Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31393
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 3.1
02_04_0311 + 21936812-21937861 29 3.1
04_04_0057 + 22410167-22411330 29 4.1
05_03_0373 - 13194723-13195847,13196219-13196809 29 5.5
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 5.5
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 5.5
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 28 7.2
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 28 7.2
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 9.6
01_06_0751 + 31690411-31690443,31692900-31694240 28 9.6
01_03_0163 + 13346586-13347809 28 9.6
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 530 DPQPPAAVLAS--SPFVTSQPTEELLREFETVYGAVELTHL 646
DP PA V S SP + QP EL+RE T+ +E+ HL
Sbjct: 78 DPDHPAPVNLSLESPMLKVQPANELIREVATL--ELEIKHL 116
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 464 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEE 595
WLE V P N+ + P P PPA +SSP + EE
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAAAEE 194
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 464 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 568
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 409 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 314
V+E G + QL+R WR + R ++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 473 EKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETV-YGAVELTHLT 649
E+++ P + PE + P PP A +P T PT V A L T
Sbjct: 108 EEIEDPDGDSPFVDAPEHISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPLPART 167
Query: 650 PPQSPPGPADSVA 688
P +P P + A
Sbjct: 168 PTPTPSAPPRAAA 180
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 515 VPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP--GPADSVA 688
VP P PPAA A + + + L +F T A +T P PP P D V+
Sbjct: 214 VPAPAPPPPPAAAPAPAAQPEQRDRDAALDQFATPAPAPAPPPVTAPPPPPVAAPNDCVS 273
Query: 689 S 691
S
Sbjct: 274 S 274
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 541 PGSGSSFKSFCDLAAH*RTAAGIRNGLWCCR 633
P GS S C + TA G+ GLWCCR
Sbjct: 397 PSCGSYTASACPIYVESGTA-GVVIGLWCCR 426
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 413 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 532
L+ +L C ++N+ +LE+++ P +FE + +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 554 LASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPADSVASE 694
+A+ V + +EEL E E Y + + L+P +P P + SE
Sbjct: 81 IATLLMVEEKVSEELTSETENPYAVSDFSKLSPTANPASPPECGRSE 127
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 506 ISEVPERVD-PQPPAAVLASSPFVTSQPT 589
I E+P+R + P PPAA P T Q T
Sbjct: 195 IDELPDRAEAPPPPAAASTEQPEATEQAT 223
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 212 SWAAAIDLLTNDECRLLLEVED 277
SW AA+D +T DE R LLE D
Sbjct: 115 SWDAALDGITADEARALLESID 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,942,994
Number of Sequences: 37544
Number of extensions: 393389
Number of successful extensions: 1296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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