Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31393
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 31   1.0  
SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              29   4.2  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     29   4.2  
SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 539 PPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPADSVAS 691
           PP A   SS   TS+PTE++    +        T  T P  PP P D  +S
Sbjct: 78  PPTAKTTSSTSSTSKPTEDVGTSPQPSTENETHTPTTYPTPPPNPTDDTSS 128


>SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 629 VELTHLTPPQSPPGPADSVASELR 700
           + LT LTPPQ PP P D    E++
Sbjct: 74  LRLTRLTPPQPPPQPPDQQGPEVQ 97


>SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 506 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 667
           ISE P    P+PP ++ ASS        EE    F ++        L  PQ PP
Sbjct: 222 ISEAPPASTPKPPVSMPASSNVAVITVKEEGADPFLSIQAISFFKLLVLPQDPP 275


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 659 SAAVLNALTRQHHKPFRI--PAAVLQWAARSQKDLKLEPLP 543
           +  +LN++  QH +PF +      L W++ S+++ K + LP
Sbjct: 7   TGCILNSILYQHKRPFNVCLTRKTLYWSSESKEETKPKNLP 47


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +2

Query: 506 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 673
           +S V     P+P   V    P +T QP+ E  +   +         E +  TPP++ P P
Sbjct: 172 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 231

Query: 674 ADS 682
           A S
Sbjct: 232 ARS 234


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +2

Query: 506 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 673
           +S V     P+P   V    P +T QP+ E  +   +         E +  TPP++ P P
Sbjct: 117 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 176

Query: 674 ADS 682
           A S
Sbjct: 177 ARS 179


>SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 653 AVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQE 516
           AVL AL+  HH+    P  V  W  +   D+   P+  V+     E
Sbjct: 7   AVLTALSDLHHRKAAGPDGVPNWLLKDYADILASPVTSVLNSSFAE 52


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 632  RQHHKPFRIPAAVLQWAARSQKDLKLEP 549
            +QH +P R P A +  AAR  +   LEP
Sbjct: 1830 KQHQEPARTPVAAVPAAARDARITSLEP 1857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,401,141
Number of Sequences: 59808
Number of extensions: 431975
Number of successful extensions: 1052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)