Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31393
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   7.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 325 CSARKVFKQITIIIEEILNFEQQTALIVSEQID 227
           CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 135 CSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 73  LPKWRPHRXKLVHLHKTPTSLDI 141
           LP   PH   + HL +T TS ++
Sbjct: 101 LPPLHPHTAMVTHLPQTLTSENV 123


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 632 ELTHLTPPQSPPGPADSVASE 694
           +L    P   PPGP D V  E
Sbjct: 61  QLKPYNPEHKPPGPKDLVYLE 81


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 632 ELTHLTPPQSPPGPADSVASE 694
           +L    P   PPGP D V  E
Sbjct: 62  QLKPYNPEHKPPGPKDLVYLE 82


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 194 SASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKN 310
           S SQ+++ AA ++    DE RLL  V     D CD  ++
Sbjct: 161 SRSQEKAVAAELE----DEQRLLATVVQAHLDTCDFTRD 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,837
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)