Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31393
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    33   0.21 
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p...    29   2.6  
At4g35870.1 68417.m05094 expressed protein                             29   3.5  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    29   3.5  

>At1g77460.1 68414.m09020 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2110

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 446  ENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTS 580
            E I ++W +  +D   IFE +S+V  + DPQPP  +  S+ FV S
Sbjct: 1596 EKISASWPKAVLDAEGIFE-LSKVILQEDPQPPLDLWESAAFVLS 1639


>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 315

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 509 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGP 673
           S+ P+ V  +P +    SSP    Q   E  +E +      +LT LTPP  PP P
Sbjct: 188 SKKPQLVTKEPISPKPLSSPRKQQQLQTET-KEAKASVSQTKLTTLTPPGPPPPP 241


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 407 NDLLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQP 586
           ND+LQ +  Q ++  + +      ++ P + EN+ E P   D +P +  L+  P   + P
Sbjct: 599 NDMLQLVPEQNEEYALENQEPSSNLETPLLPENMFESPRFGDIEPMSQDLSEYPISRTSP 658

Query: 587 TEELLREFETVYGAVELT 640
             +   +F   Y A  LT
Sbjct: 659 IPKQKFDFAQYY-AFNLT 675


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 563 SPFVTSQPTEELLREFETVYGAVELTH--LTPPQSPPGP 673
           SPFV SQPT       + + G  E T    T P SPP P
Sbjct: 16  SPFVASQPTNVGGFTDQKIIGGSETTQPPATSPPSPPSP 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,803
Number of Sequences: 28952
Number of extensions: 297893
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)