Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31392
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   4.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 440 WDGPTVSTPAF 472
           WD PT S PAF
Sbjct: 7   WDTPTSSAPAF 17


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 589 APSQRRMSSVALDHHHQNCLAAA 521
           +P+ R    V+  HHH    AAA
Sbjct: 55  SPAARMYPYVSAAHHHHQAAAAA 77


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 589 APSQRRMSSVALDHHHQNCLAAA 521
           +P+ R    V+  HHH    AAA
Sbjct: 55  SPAARMYPYVSAAHHHHQAAAAA 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,886
Number of Sequences: 336
Number of extensions: 3453
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)