Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31390
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 93 4e-20
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 52 1e-07
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.3
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.0
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 26 7.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.3
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 9.3
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.3
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 93.1 bits (221), Expect = 4e-20
Identities = 43/107 (40%), Positives = 67/107 (62%)
Frame = +2
Query: 20 IYKKTDEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEPFQ 199
IYKKTD Y LKL+ASR YSE++ K G PF+ R+ ++ +G+ EC +HKL+ P++
Sbjct: 249 IYKKTDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYE 308
Query: 200 VLYERPGELVAQFKFTALLLPSGTHRITGLPFDKSQCKSERSIKDPE 340
VL ++ G +VA+F T L GT ++ + KS++ ++DPE
Sbjct: 309 VLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPE 355
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +2
Query: 44 YQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEPFQVLYERPGE 223
Y LKLKASR SE++ + PF+ S E + LG+ E + ++ P VL P
Sbjct: 298 YMLKLKASRSLLSEIKKEKSVFPFHFGSLSSERNL-LGLRELTDRHILVPMPVLISSPSN 356
Query: 224 LVAQFKFTALLLPSGTHRITGL--PFDKSQCKSERSIKD 334
++A+ + T + P+ + + L P S KS+ S++D
Sbjct: 357 VIAREELTVITQPNPSSDLLCLTVPTPPSYVKSDFSLED 395
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 162 LSASTTNSLSHSRFSMSVQENWWHSLSSRLFCF 260
L + T++L H+RF + +W H+ + ++CF
Sbjct: 4028 LLPTMTHTLPHNRFRLFFFLSWLHATLAEIYCF 4060
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 615 PRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFC 496
PR +L V +LD S CG L+++ HNF C
Sbjct: 95 PRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQC 134
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 525 Y*DNHILTYS-YVNKYLALYLQTNPRSSLILA*TPECL 635
Y +N ILT + V+ YL YLQ NP + IL P+ L
Sbjct: 77 YMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVL 114
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 7.0
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 357 IHQQN---LTRRRKR-KQELKSPWKWRLLPSKNT*VPRNK*Y*HFSTI*MDKNNKNCAIF 524
+HQ+N L RR++R K+E K P K RL S+N + TI DK ++
Sbjct: 18 LHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAE 77
Query: 525 Y*DNHILTY-SYVNKYLALYLQTNPRSS 605
D+ Y S K L + T+ R+S
Sbjct: 78 LKDDEFSAYFSEERKVPKLLVTTSKRAS 105
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 442 IHKCPGINDINIFPQYKWTKITKIVQFF 525
+++ PG ND++++P ++ I I+ F
Sbjct: 449 VNEIPGWNDVDLYPLFRALSIPNILVLF 476
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 119 LRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKF 244
+R+ D+E+ LG+++ + H+ +PFQ + P E A F
Sbjct: 40 IRAADRES---LGILQNVTHEASQPFQP-QDHPSEAAALLMF 77
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 253 KSRELKLCHQFSWTLIENLEWLNEF 179
KS L LC W + + LEW+N F
Sbjct: 502 KSHTLGLC----WRMYDRLEWINSF 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,680
Number of Sequences: 5004
Number of extensions: 68515
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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