Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31390
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185...   107   7e-24
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387...    36   0.036

>05_03_0633 +
           16416913-16417009,16417976-16418060,16418398-16418551,
           16418808-16419023,16419105-16419241,16419317-16419408,
           16419622-16419804,16421722-16421819,16422021-16422070,
           16424605-16424756,16424944-16425069,16426315-16426523
          Length = 532

 Score =  107 bits (258), Expect = 7e-24
 Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
 Frame = +2

Query: 17  TIYKKT-DEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEP 193
           TIYK+  D+ Y LK+KASR  +SE+  K   MPF  R+ + E  ARLG+VEC+NH+L++P
Sbjct: 194 TIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFTARALE-EKRARLGLVECMNHELLQP 252

Query: 194 FQVLYERPGELVAQFKFTALLLPSGTHRITGLPFDKSQCKSERSIKD 334
           + VL+E+PG+LVA  KFT LLLPSG+ R+T     + Q    +SI+D
Sbjct: 253 YPVLHEKPGDLVAHIKFTVLLLPSGSQRVTSHSLQELQ--PTKSIED 297


>12_02_1200 +
           26937624-26937674,26937913-26938005,26938582-26938728,
           26940299-26940379,26940711-26940849,26940977-26941013,
           26941095-26941202,26941434-26941533,26941638-26941783,
           26941862-26941953,26942086-26942180,26942435-26942531,
           26942623-26942766,26942912-26943129,26943213-26943323
          Length = 552

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +2

Query: 14  CTIYKKTDEVYQLKLKASR--MFYSEVRNKHGNMPFNLRSFDK--ETSARLGVVECINHK 181
           C+ Y K  +V  + L+ ++       + N  G + F  R  D+  ET   + +    +  
Sbjct: 454 CSHYMKNFDVGHVPLRVAKAKQLLGTINNNFGTLAFCRRYLDRLGETKYLMALKNLCDVG 513

Query: 182 LIEPFQVLYERPGELVAQFKFTALLLPS 265
           +++P+  L +  G  V+QF+ T LL P+
Sbjct: 514 IVQPYPPLCDVRGSYVSQFEHTILLRPT 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,119,232
Number of Sequences: 37544
Number of extensions: 397464
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)