Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31390
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              128   4e-30
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)                     29   5.6  
SB_41656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  128 bits (310), Expect = 4e-30
 Identities = 57/106 (53%), Positives = 78/106 (73%)
 Frame = +2

Query: 17  TIYKKTDEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEPF 196
           T+YK+T  +Y LK+KASR+F+S+V NK   MPF LR+ + E  A++G+VEC  H+L+EPF
Sbjct: 249 TVYKRTGNIYNLKMKASRVFFSDVCNKFTMMPFTLRALEDEKKAKMGIVECAKHELMEPF 308

Query: 197 QVLYERPGELVAQFKFTALLLPSGTHRITGLPFDKSQCKSERSIKD 334
            VL+E+ GE VAQFKFT LL+P+G  RIT  PF+    +SE  I+D
Sbjct: 309 NVLWEKEGEFVAQFKFTMLLMPNGNIRITQGPFEPDMIQSEHCIED 354


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 645 SINEGILVSKPRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFCPFILWKNV 472
           ++ +G+L +  R+E I  +    K++I    Y S C    KK H FC    F  +KN+
Sbjct: 754 NVKQGVLSTNQRAEAISNI----KMEIMGGLYHS-CKLPVKKRHQFCPVNSFCAYKNL 806


>SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)
          Length = 496

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +2

Query: 29  KTDEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEPFQVLY 208
           +++  Y + LKASR++Y ++ +K G++ F  R F      R+G  E       E  + L+
Sbjct: 201 ESERSYDVHLKASRLYYFDLIHKQGDLLF--RDF-INVQWRIGDSEVFTDIPSEYLKSLH 257

Query: 209 ERPGELVAQFKFTALLLPSGTH 274
           +   E+      T   LP+G H
Sbjct: 258 D-DTEISDNTVNTNTFLPTGLH 278


>SB_41656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 387 KRKQELKSPWKWRLLPSKNT 446
           KR  E ++P+ WR LPSK T
Sbjct: 4   KRPYERETPFSWRPLPSKGT 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,089,824
Number of Sequences: 59808
Number of extensions: 499207
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)