Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31390
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 133 2e-31
Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical p... 32 0.40
AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine re... 31 0.70
Z78419-1|CAB01705.1| 306|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical ... 29 2.8
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 29 5.0
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 28 6.6
AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine re... 28 6.6
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 133 bits (321), Expect = 2e-31
Identities = 59/109 (54%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Frame = +2
Query: 17 TIYKKTDEV-YQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEP 193
T+++K ++V YQLK+KASR+F+S+V HG MPF+LRSF++E A++GVVEC + L+ P
Sbjct: 256 TVFRKNEQVSYQLKMKASRVFFSDVNKVHGPMPFSLRSFEEEVKAKMGVVECEKYGLLVP 315
Query: 194 FQVLYERPGELVAQFKFTALLLPSGTHRITGLPFDKSQCKSERSIKDPE 340
+ VLYE+ GELVAQFK T L++P+G +I GLPFD +S+ ++KDPE
Sbjct: 316 YPVLYEKEGELVAQFKATVLVMPNGLLKIAGLPFDSDVYQSDLTVKDPE 364
>Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.40
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -2
Query: 756 ITAYLFTYKMAT*SN*YTLM*KKLDTKVEKLLCYKMYSINEGILVSKPRSEKILGLFVGT 577
+TA L +K+ + + +K D K EK+L M I ++V P + + LF +
Sbjct: 219 VTAILMFFKLLQKRKISSELHRKTDLKSEKVLTATMILILLPVVV--PATLSFVNLFAPS 276
Query: 576 KLDIYSHNYKSRCGCLSKKLHNF-CYF 499
Y + + SRC CL + H CYF
Sbjct: 277 A---YPYIFLSRCICLDARAHFVSCYF 300
>Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.40
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -2
Query: 756 ITAYLFTYKMAT*SN*YTLM*KKLDTKVEKLLCYKMYSINEGILVSKPRSEKILGLFVGT 577
+TA L +K+ + + +K D K EK+L M I ++V P + + LF +
Sbjct: 219 VTAILMFFKLLQKRKISSELHRKTDLKSEKVLTATMILILLPVVV--PATLSFVNLFAPS 276
Query: 576 KLDIYSHNYKSRCGCLSKKLHNF-CYF 499
Y + + SRC CL + H CYF
Sbjct: 277 A---YPYIFLSRCICLDARAHFVSCYF 300
>AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine
receptor, class t protein61 protein.
Length = 300
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = -2
Query: 666 LLCYKMYSINEGILVSKPRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFCPFI 487
L+ Y++ + L+SK + +I L T + +Y C L+ HN+ + P
Sbjct: 221 LIIYRLVKTKKRFLISKSYNAEIKVLIQATVITVY-------CTVLNVLWHNYSWMLPQN 273
Query: 486 LWKNVNIIYSWAL 448
LW + + W L
Sbjct: 274 LWSYTALNFMWIL 286
>Z78419-1|CAB01705.1| 306|Caenorhabditis elegans Hypothetical
protein F26A3.1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 29 KTDEVYQLKLKASRMFYSEVRNKHGNMPFNLR-SFDKETSARLGVVECINHKL 184
K DE Q LK +FY+ H MP +L+ + R+ + E +NHKL
Sbjct: 50 KKDEDEQKNLKNQYLFYTVSSLNHVRMPDHLKDDGEHRNHDRISLEEQVNHKL 102
>AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical
protein Y50E8A.7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 599 IFSDLGLDTRMPSF--IEYIL*HNSFSTLVSNFFHISXXXXXXXAIL*VNKYAVIFGVHA 772
IF+D G D + + EY L H SFST NF++ S + +Y + + H
Sbjct: 97 IFADAGFDVWLGNIRGTEYGLNHTSFSTNGVNFWNFSLYEHSHYDLRQQIEYVLDYTRHE 156
Query: 773 NTFY 784
+ FY
Sbjct: 157 SLFY 160
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 98 HGNMPFNLRSFDKETSARLGVVECINHKLIEPFQVL 205
HG +P N+R +E ARL + + I+ K E V+
Sbjct: 78 HGALPENMREVTREMYARLALFDEISDKKFEKLNVM 113
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 722 HKVISTHLCERNWTLKLKSYYAIKCI 645
HKV ST+L E NW K K + +KC+
Sbjct: 253 HKVDSTYLSEANWEPK-KYHKNVKCV 277
>AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine
receptor, class x protein101 protein.
Length = 318
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -1
Query: 313 LTLAFIKRQASNTMCATRKQKSRELKLCHQFSWTLIENLEWLNEFVVDALNNT 155
L LA K Q ++ RKQKSR+L F + I+ +WL F +D++N+T
Sbjct: 211 LVLAINKNQLDSSTVRRRKQKSRKL-----FIQSCIQ--DWL--FAIDSINST 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,344
Number of Sequences: 27780
Number of extensions: 384598
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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