Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31389
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    44   3e-05
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    37   0.003
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    29   0.50 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.88 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.88 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   3.5  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   4.7  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   6.2  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   6.2  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   8.2  

>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
           GDL  +   E +F +  P  VIH A+ V    HN+A ++ +F  N+    NI++AC K+N
Sbjct: 54  GDLTKQGDIERVFEEFHPRVVIHTASPV----HNLARDI-YFEVNVDGTANIIKACQKFN 108

Query: 288 VKKVVSCLST-CIFPDKTTYPIDET 359
           V  +V   S   +F       +DE+
Sbjct: 109 VDALVYTSSAGVVFNGADLINVDES 133


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +3

Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
           DLRDK     +F   K   VIH AA+   +  +M   L+++  N+     +L    ++ V
Sbjct: 63  DLRDKEGLAQIFDTFKIKGVIHFAAL-KAVGESMKLPLEYYDNNICGTITLLNVMREHRV 121

Query: 291 KKVVSCLSTCIFPDKTTY 344
           K VV   S  ++ D T +
Sbjct: 122 KTVVFSSSATVYGDATRF 139


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 207 CETVPQPLPLNVLHG*ACV*QIELLFEFYLG--GRHPWNR*ISTSHYHNHY 61
           C + P+  PL+V+     + Q+EL  EF +G   R  WN  + T+    +Y
Sbjct: 16  CTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNY 66


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 219 NLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMV 365
           N     E + +  NILQ+     V K  SCL T I   KT+  I ET++
Sbjct: 537 NASAAEEIIPLLSNILQSSDTIVVSKAYSCLETIIESLKTSPNIIETII 585


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
 Frame = +3

Query: 336 TTYPIDETMVHNGPPHSSNF--GYSYAKRMI---DVLNRGYNESYGCMFTSVIPCNVFGP 500
           TT+P  +  + N PP  S F  G S+  ++      L R   + YG     +   N+  P
Sbjct: 324 TTFPSSKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLLRADTKQYGLALPKITNSNLISP 383

Query: 501 YDNFSLESSHV 533
              F+   S V
Sbjct: 384 NQTFNPVKSSV 394


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +3

Query: 207  NMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHS 386
            N   N   F+    +   I+    +YNV++ +S L + I      YP+D   V + P   
Sbjct: 1021 NNTSNGSLFKRLRYLKSRIIDLNTQYNVRESISSLCSSI------YPLDIKTVDSSPNKR 1074

Query: 387  SNFGYSYAKRMIDVLNRG 440
             ++G S     +  +N G
Sbjct: 1075 LDYGNSGFAHEVQFINVG 1092


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 210 MAHNLDFFRENMSINDNILQACHKYNVKKVVS 305
           +  NLD  +   S     +Q CHK+N+  VV+
Sbjct: 757 LVENLDLVKNGCSNMVKHIQNCHKFNIPVVVA 788


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = +3

Query: 57  RNSDYDSETWIFSGSKDG-----DLRDKTQ 131
           R+S   SET +FSGS+DG     DL ++TQ
Sbjct: 229 RSSFNQSETIVFSGSEDGKVYLWDLENETQ 258


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 120 DKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFR 236
           D T  + L    K +HV HL + V G+        D FR
Sbjct: 343 DTTSVDKLMTIEKFSHVQHLVSQVSGVLRPDKTRFDAFR 381


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +3

Query: 468 TSVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLA 647
           +S IP       D+F   SS  I A     D+ +     + TV  S  P+   IYS    
Sbjct: 92  SSSIPITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTV--SSTPVST-IYS---- 144

Query: 648 RAVHLGSSGTTTVSNLLSYQL 710
                G+SGTT VS+  +YQ+
Sbjct: 145 -----GTSGTTFVSSSTTYQV 160


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 343 ILLMRLWYTMVHLIAPILD--IAMPKE*LTF*IEDTMSLMVVCSPQLFLVMCLGHT 504
           ILL  L+Y ++++++P++   ++     L+          VV S Q  +++CLG+T
Sbjct: 43  ILLSALFYQIINILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYT 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,699
Number of Sequences: 5004
Number of extensions: 71620
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)