Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31389
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   37   0.019
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             31   0.71 
SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   28   6.6  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    28   6.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +3

Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
           DL +K   + +F KHK   V+H A +   +  ++   L ++  N++   ++L+   K+ V
Sbjct: 96  DLLNKEALDDIFKKHKFNGVLHFAGL-KAVGESVQIPLRYYHNNLTGTLHLLECMKKHGV 154

Query: 291 KKVVSCLSTCIFPDKTTYPIDET 359
             +V   S  ++ D    PI E+
Sbjct: 155 HNLVFSSSATVYGDPQFLPITES 177


>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFH-NMAHNLDFFRENMSINDNILQACHKYN 287
           D+ D    +++   H    ++H +A++  +   N+   L     N+    NI++ C KYN
Sbjct: 80  DVLDPQSLQSIVVNHNIDWIVHFSAILSAVGEQNVTQALQV---NIEGFHNIIETCRKYN 136

Query: 288 VKKVVSCLSTCIFPDKTTYPIDETM-VHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCM 464
           + ++ S  +   F  +T  P+D T  +    P +    Y  AK  +++L   Y+  YG  
Sbjct: 137 L-RLFSPSTIGAFGPET--PMDNTPDITIQRPKTI---YGVAKVHMELLGEYYHHRYGLD 190

Query: 465 FTS 473
           F S
Sbjct: 191 FRS 193


>SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 15  GQAIKTVIERDRQKRNSDYDSETWIFSGSKDGDL 116
           G+ ++  +   R+K +S +D  TW F+ +K GDL
Sbjct: 638 GKLLEKDLAAQREKADSSFDIATWRFASNKPGDL 671


>SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 NDNILQACHKYNVKKVVSCLST 317
           +DN+L+ CHK+ +KK V  L +
Sbjct: 110 SDNLLEVCHKHQLKKKVELLQS 131


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 24  IKTVIERDRQKRNSDYDSETWIFSGSKDG-DLRDKTQTEALFAKHKPTHVIHL 179
           +++++E   Q +   Y ++ W F     G DL  K Q + + A  K TH +HL
Sbjct: 16  LQSLVELPAQFKEIPYQAK-WCFRDLTHGKDLLAKMQAKIVTAPDKTTHYVHL 67


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 510 FSLESSHVIPALIRR-MDDAMQKGDPTFTVMGSGKPLRQF--IYSLDLAR 650
           +S  +  V PAL+        Q GDP +T   + K  RQ+  +Y +D++R
Sbjct: 115 YSYANGFVGPALMNGCFGSGYQPGDPCYTAKETTKQCRQYLSVYDIDVSR 164


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 324 FPDKTTYPIDETMVHNGPPHSSNFGYSYA 410
           FP +T Y +   +VH+G    S   Y YA
Sbjct: 860 FPSETMYALTSVIVHSGTSSESGHYYCYA 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,578,645
Number of Sequences: 59808
Number of extensions: 521288
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)