Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31389
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...   308   4e-84
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...   308   4e-84
Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...    50   2e-06
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...    50   2e-06
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score =  308 bits (755), Expect = 4e-84
 Identities = 142/216 (65%), Positives = 170/216 (78%)
 Frame = +3

Query: 3   SGLVGQAIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLA 182
           +GLVG AIK V+E   ++     D E W+F GSKD DL +  +T  LF   KPTHVIHLA
Sbjct: 10  TGLVGSAIKKVVETTEKR-----DDEKWVFIGSKDCDLENLEETRELFESVKPTHVIHLA 64

Query: 183 AMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETM 362
           AMVGGLFHN+AHNL FFR+NM+INDN+L  CH+++V K VSCLSTCIFPDKT+YPIDETM
Sbjct: 65  AMVGGLFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETM 124

Query: 363 VHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPYDNFSLESSHVIPA 542
           VH GPPH SNFGYSYAKRMIDVLN+GY + +G  +TSV+PCNVFGP+DN++L+S HV+PA
Sbjct: 125 VHLGPPHDSNFGYSYAKRMIDVLNKGYAQEHGRKYTSVVPCNVFGPHDNYNLQSGHVLPA 184

Query: 543 LIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
           LI +   A + G P   V GSG PLRQFIYS+DLAR
Sbjct: 185 LIHKAYVAQRDGTP-LQVYGSGTPLRQFIYSIDLAR 219


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score =  308 bits (755), Expect = 4e-84
 Identities = 142/216 (65%), Positives = 170/216 (78%)
 Frame = +3

Query: 3   SGLVGQAIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLA 182
           +GLVG AIK V+E   ++     D E W+F GSKD DL +  +T  LF   KPTHVIHLA
Sbjct: 10  TGLVGSAIKKVVETTEKR-----DDEKWVFIGSKDCDLENLEETRELFESVKPTHVIHLA 64

Query: 183 AMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETM 362
           AMVGGLFHN+AHNL FFR+NM+INDN+L  CH+++V K VSCLSTCIFPDKT+YPIDETM
Sbjct: 65  AMVGGLFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETM 124

Query: 363 VHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPYDNFSLESSHVIPA 542
           VH GPPH SNFGYSYAKRMIDVLN+GY + +G  +TSV+PCNVFGP+DN++L+S HV+PA
Sbjct: 125 VHLGPPHDSNFGYSYAKRMIDVLNKGYAQEHGRKYTSVVPCNVFGPHDNYNLQSGHVLPA 184

Query: 543 LIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
           LI +   A + G P   V GSG PLRQFIYS+DLAR
Sbjct: 185 LIHKAYVAQRDGTP-LQVYGSGTPLRQFIYSIDLAR 219


>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)
 Frame = +3

Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
           D+ D+   E +F+++K   +IHLAA+   +  ++A  L ++  N+  + N++Q C KYNV
Sbjct: 66  DVCDEAALEKVFSENKFDGIIHLAALKA-VGESVAKPLQYYSNNLVASLNLIQMCLKYNV 124

Query: 291 KKVVSCLSTCIFPDKTTYPIDE 356
           K  V   S  ++   +  PI E
Sbjct: 125 KNFVFSSSATVYGPPSELPITE 146


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%)
 Frame = +3

Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
           D+ D+   E +F+++K   +IHLAA+   +  ++A  L ++  N+  + N++Q C KYNV
Sbjct: 64  DVCDEAALEKVFSENKFDGIIHLAALKA-VGESVAKPLQYYSNNLVASLNLIQMCLKYNV 122

Query: 291 KKVVSCLSTCIFPDKTTYPIDE 356
           K  V   S  ++   +  PI E
Sbjct: 123 KNFVFSSSATVYGPPSELPITE 144


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
 Frame = +3

Query: 168 VIHLAAMVGGLFHNMAHNLDFFRENM----SINDNILQACHKYNVKKVVSCLSTCIFPD- 332
           VIH AA+   +  + +  +   ++N+    ++ ++I+ + +K  VKK+V   +  ++ D 
Sbjct: 87  VIHFAAITH-VDESYSDRIGTIQDNIISTTTLLESIVNSPYK-GVKKLVHISTDEVYGDS 144

Query: 333 -KTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPYDN 509
            + T P  E+      P+ +N  Y+ +K   +++ R Y  SY   +  V   NV+GP   
Sbjct: 145 FEDTTPKSESA---SLPNPTN-PYAASKAACEMVIRSYWHSYKLPYVMVRMNNVYGP--- 197

Query: 510 FSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLARAV 656
                  +   LI +       G P + +MG G   R ++Y  D + A+
Sbjct: 198 -----RQIHTKLIPKFTKLALDGKP-YPLMGDGLHTRSWMYVEDCSEAI 240


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 450  SYGCMFTSVIPCNVFGPYDNFSLESSHVIPAL 545
            S G +FT ++ C  +G +D F+   S V+ A+
Sbjct: 1671 SMGRIFTGIVECGAWGCFDEFNRLDSTVLSAV 1702


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 503 RQLQFRIQSCNTGSYKEDG*C-YAKR*SHVHSDGKRQTTATVYLFIRSSPSCSFGVLRNY 679
           R++    Q C+T  Y  DG C YA           R TT    LFIR+ P   FG ++  
Sbjct: 284 REISVVEQKCDTMKYDVDGSCLYAME----DFSAIRNTTR---LFIRADPHYDFGFVQCV 336

Query: 680 HSI 688
           H +
Sbjct: 337 HEV 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,331
Number of Sequences: 27780
Number of extensions: 397880
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)