Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31389
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17890.3 68414.m02214 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 123 1e-28
At1g17890.2 68414.m02213 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 123 1e-28
At1g17890.1 68414.m02215 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 123 1e-28
At1g73250.1 68414.m08477 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 123 1e-28
At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase fam... 47 1e-05
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 46 3e-05
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 46 3e-05
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam... 43 2e-04
At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase fam... 43 2e-04
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam... 42 4e-04
At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase fam... 39 0.004
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 39 0.004
At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative / UDP... 37 0.012
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 34 0.11
At1g63000.1 68414.m07114 expressed protein 33 0.19
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP... 33 0.25
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP... 31 0.76
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 31 0.76
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 30 1.3
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 30 1.8
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 30 1.8
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 29 3.1
At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar ... 29 4.1
At4g19280.1 68417.m02842 hypothetical protein 28 5.4
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 5.4
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi... 28 5.4
At5g52860.1 68418.m06561 ABC transporter family protein 28 7.1
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ... 28 7.1
>At1g17890.3 68414.m02214
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 123 bits (297), Expect = 1e-28
Identities = 66/181 (36%), Positives = 99/181 (54%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 48 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 107
Query: 291 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 470
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 108 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 167
Query: 471 SVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
S +P N++G DNF E+SHV+PAL+RR +A V GSG PLR+F++ DLA
Sbjct: 168 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 227
Query: 651 A 653
A
Sbjct: 228 A 228
>At1g17890.2 68414.m02213
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 123 bits (297), Expect = 1e-28
Identities = 66/181 (36%), Positives = 99/181 (54%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 48 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 107
Query: 291 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 470
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 108 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 167
Query: 471 SVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
S +P N++G DNF E+SHV+PAL+RR +A V GSG PLR+F++ DLA
Sbjct: 168 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 227
Query: 651 A 653
A
Sbjct: 228 A 228
>At1g17890.1 68414.m02215
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 328
Score = 123 bits (297), Expect = 1e-28
Identities = 66/181 (36%), Positives = 99/181 (54%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 56 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 115
Query: 291 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 470
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 116 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 175
Query: 471 SVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
S +P N++G DNF E+SHV+PAL+RR +A V GSG PLR+F++ DLA
Sbjct: 176 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 235
Query: 651 A 653
A
Sbjct: 236 A 236
>At1g73250.1 68414.m08477
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1) identical to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 323
Score = 123 bits (296), Expect = 1e-28
Identities = 65/181 (35%), Positives = 100/181 (55%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DL + E+ F++ KP +VI AA VGG+ N + DF N+ I N++ + +++ V
Sbjct: 53 DLTRQADVESFFSQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGV 112
Query: 291 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 470
KK++ S+CI+P PI E+ + +N Y+ AK + Y +G
Sbjct: 113 KKLLFLGSSCIYPKFAPQPIPESALLTASLEPTNEWYAIAKIAGIKTCQAYRIQHGWDAI 172
Query: 471 SVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSLDLAR 650
S +P N++GP DNF E+SHV+PAL+RR +A G V G+G PLR+F++ DLA
Sbjct: 173 SGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLAD 232
Query: 651 A 653
A
Sbjct: 233 A 233
>At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 430
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GD+ D + LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 148 EGDINDAALLKKLFEVVPFTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEVCKSA 206
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 207 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYGL 262
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 263 SLTGLRFFTVYGPW 276
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GD+ D LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 154 EGDINDVELLRKLFKIVSFTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEICKSV 212
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 213 NPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASL----YAATKKAGEEIAHTYNHIYGL 268
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 269 SLTGLRFFTVYGPW 282
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GD+ D + + LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 149 EGDINDLSLLKKLFEVVPFTHVMHLAAQ-AGVRYAMENPGSYVHSNIAGFVNLLEVCKSA 207
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 208 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYGL 263
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 264 SLTGLRFFTVYGPW 277
>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 429
Score = 43.2 bits (97), Expect = 2e-04
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GDL D LF THV+HLAA G+ + + + + N++ N+L+ C
Sbjct: 145 EGDLNDAKLLAKLFDVVAFTHVMHLAAQ-AGVRYALENPQSYVHSNIAGLVNLLEICKAA 203
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ P E+ + P Y+ K+ + + YN YG
Sbjct: 204 NPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASL----YAATKKAGEEITHTYNHIYGL 259
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 260 AITGLRFFTVYGPW 273
>At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase family
protein similar to sugar epimerase BlmG from
Streptomyces verticillus GI:9937230; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 377
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 2/158 (1%)
Frame = +3
Query: 165 HVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTY 344
HV +LAA +GG+ +++ N I+ N+++A +K+ S CI+P+
Sbjct: 94 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQL 153
Query: 345 PIDETMVHNGP--PHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPYDNFSL 518
+ P Y K + L + YN+ +G N++GP+ +
Sbjct: 154 ETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKG 213
Query: 519 ESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIY 632
A R+ Q F + G G R F +
Sbjct: 214 GREKAPAAFCRK----AQTSTDRFEMWGDGLQTRSFTF 247
>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam
profile: PF01370 NAD dependent epimerase/dehydratase
family
Length = 460
Score = 41.9 bits (94), Expect = 4e-04
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GDL D LF TH++HLAA G+ + M + + N++ N+L+
Sbjct: 169 EGDLNDGPLLRKLFDVVPFTHILHLAAQ-AGVRYAMKNPQSYIASNIAGFVNLLEVAKAA 227
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 228 NPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASL----YAATKKAGEEIAHTYNHIYGL 283
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 284 SLTGLRFFTVYGPW 297
>At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 436
Score = 38.7 bits (86), Expect = 0.004
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 284
+GD+ D LF THV+HLAA G+ + M + + N++ N+L+
Sbjct: 153 EGDINDAVLLRKLFDVVLFTHVMHLAAQ-AGVRYAMQNPGSYVNSNIAGFVNLLEVSKSA 211
Query: 285 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 461
N + +V S+ ++ + P E + P Y+ K+ + + YN YG
Sbjct: 212 NPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL----YAATKKAGEGIAHTYNHIYGL 267
Query: 462 MFTSVIPCNVFGPY 503
T + V+GP+
Sbjct: 268 SLTGLRFFTVYGPW 281
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
GDLR+K E LF+K + VIH A + + ++ + +F N+ N+ + KYN
Sbjct: 67 GDLRNKGDIEKLFSKQRFDAVIHFAGL-KAVGESVENPRRYFDNNLVGTINLYETMAKYN 125
Query: 288 VKKVVSCLSTCIFPDKTTYPIDE 356
K +V S ++ P E
Sbjct: 126 CKMMVFSSSATVYGQPEKIPCME 148
>At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative strong similarity to SP|Q42605 [GI:1143392]
from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327
(1), 27-34 (1996))
Length = 351
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
GDLR+K E LF+ + VIH A + + ++ + +F N+ N+ + KYN
Sbjct: 67 GDLRNKGDIEKLFSNQRFDAVIHFAGL-KAVGESVGNPRRYFDNNLVGTINLYETMAKYN 125
Query: 288 VKKVVSCLSTCIFPDKTTYPIDE 356
K +V S ++ P E
Sbjct: 126 CKMMVFSSSATVYGQPEIVPCVE 148
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 33.9 bits (74), Expect = 0.11
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 281
G L D+ A KPTHV + A + G + +H + R N++ + C +
Sbjct: 414 GRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRE 473
Query: 282 YNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFG--YSYAKRMIDVLNRGYN 446
N +++ + CIF T+P + + FG YS K M++ L R ++
Sbjct: 474 -NDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFD 529
Score = 30.7 bits (66), Expect = 1.0
Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 3/185 (1%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
GD+ L ++H AA + ++ ++ +F + N+ +L+AC
Sbjct: 66 GDIASDDLVNYLLITENIDTIMHFAAQTH-VDNSFGNSFEFTKNNIYGTHVLLEACKVTG 124
Query: 288 VKKVVSCLSTCIFPDKTTYPIDETMV---HNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 458
+ +ST D+ DE H YS K ++L Y SYG
Sbjct: 125 QIRRFIHVST----DEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 180
Query: 459 CMFTSVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSL 638
+ NV+GP + F +IP I G P + G G +R ++Y
Sbjct: 181 LPVITTRGNNVYGP-NQF---PEKMIPKFIL----LAMSGKP-LPIHGDGSNVRSYLYCE 231
Query: 639 DLARA 653
D+A A
Sbjct: 232 DVAEA 236
>At1g63000.1 68414.m07114 expressed protein
Length = 301
Score = 33.1 bits (72), Expect = 0.19
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 281
G L+D+ A KP+HV + A + G + +H ++ R N++ + C +
Sbjct: 44 GRLQDRQSIVADIESVKPSHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICRE 103
Query: 282 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGY 443
+ +++ + CIF + +P+ + P+ + YS K M++ L + Y
Sbjct: 104 KGL-VLINYATGCIFEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNY 158
>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
Length = 348
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DLRDK E +F++ K V+H A + + ++A L ++ N+ +L+ +
Sbjct: 63 DLRDKPALEKVFSETKFDAVMHFAGL-KAVGESVAKPLLYYNNNLIATITLLEVMAAHGC 121
Query: 291 KKVVSCLSTCIF 326
KK+V S ++
Sbjct: 122 KKLVFSSSATVY 133
>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 350
Score = 31.1 bits (67), Expect = 0.76
Identities = 27/114 (23%), Positives = 48/114 (42%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DLRD+ E +F++ K VIH A + + ++ L ++ N+ +L+ +Y
Sbjct: 63 DLRDRPALEKIFSETKFDAVIHFAGL-KAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGC 121
Query: 291 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNES 452
K +V S ++ P E P S+ Y K I+ + R + S
Sbjct: 122 KNLVFSSSATVYGWPKEVPCTEE-----SPISATNPYGRTKLFIEEICRDVHRS 170
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +3
Query: 111 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 290
DLRD++ E +F++ K VIH A + + ++ L ++ N+ +L+ ++
Sbjct: 64 DLRDRSALEKIFSETKFDAVIHFAGL-KAVGESVEKPLLYYNNNLVGTITLLEVMAQHGC 122
Query: 291 KKVVSCLSTCIFPDKTTYPIDE 356
K +V S ++ P E
Sbjct: 123 KNLVFSSSATVYGSPKEVPCTE 144
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 30.3 bits (65), Expect = 1.3
Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 3/185 (1%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
GD+ L + ++H AA + ++ ++ +F + N+ +L+AC
Sbjct: 64 GDIASADLVNYLLITEEIDTIMHFAAQTH-VDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
Query: 288 VKKVVSCLSTCIFPDKTTYPIDETMV---HNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 458
+ +ST D+ DE H YS K ++L Y SYG
Sbjct: 123 QIRRFIHVST----DEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178
Query: 459 CMFTSVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSL 638
+ NV+GP + F +IP I G P + G G +R ++Y
Sbjct: 179 LPVITTRGNNVYGP-NQF---PEKLIPKFIL----LAMNGKP-LPIHGDGSNVRSYLYCE 229
Query: 639 DLARA 653
D+A A
Sbjct: 230 DVAEA 234
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 281
G L D+ A KP+HV + A + G + +H + R N++ + C +
Sbjct: 411 GRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRE 470
Query: 282 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGYN 446
N +++ + CIF +P + P+ + YS K M++ L R ++
Sbjct: 471 -NDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFD 526
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 281
G L D++ KPTHV + A + G + +H + R N++ + C +
Sbjct: 416 GRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCRE 475
Query: 282 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGYN 446
+ + +++ + CIF +P + P+ + YS K M++ L + Y+
Sbjct: 476 HGL-LMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYD 531
Score = 28.7 bits (61), Expect = 4.1
Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 3/185 (1%)
Frame = +3
Query: 108 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 287
GD+ L ++H AA + ++ ++ +F + N+ +L+AC
Sbjct: 64 GDIASADLVNHLLITEGIDTIMHFAAQTH-VDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
Query: 288 VKKVVSCLSTCIFPDKTTYPIDETMV---HNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 458
+ +ST D+ DE + H YS K ++L Y SYG
Sbjct: 123 QIRRFIHVST----DEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178
Query: 459 CMFTSVIPCNVFGPYDNFSLESSHVIPALIRRMDDAMQKGDPTFTVMGSGKPLRQFIYSL 638
+ NV+GP + F +IP I + + G G +R ++Y
Sbjct: 179 LPVITTRGNNVYGP-NQF---PEKLIPKFI-----LLAMRGQVLPIHGDGSNVRSYLYCE 229
Query: 639 DLARA 653
D+A A
Sbjct: 230 DVAEA 234
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +3
Query: 309 LSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCN 488
L C DKT Y +D + P H S F ++ K + + N Y+ G ++
Sbjct: 7 LDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSN--YSSMDGVLYCKTHFEQ 64
Query: 489 VFGPYDNFS 515
+F NFS
Sbjct: 65 LFKESGNFS 73
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 288 VKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYN--ESYGC 461
+K V+ L D E+ + N P FG MI VLN G N SYGC
Sbjct: 404 LKLVIELLPASPVEDNQLASEKESFLVNQPDLLQQFGRDMLPVMIQVLNSGANVYVSYGC 463
Query: 462 M 464
+
Sbjct: 464 L 464
>At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 318
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Frame = +3
Query: 258 NILQACHKYNVKKVV--SCLSTCI----FPDKTTYPIDETMVHN-GPPHSSNFGYSYAKR 416
N+L+A ++NV++VV S +S + +P+K P+DE+ + S Y +K
Sbjct: 106 NVLEAAKRFNVRRVVITSSISALVPNPNWPEKV--PVDESSWSDLDFCKSRQKWYPISKT 163
Query: 417 MIDVLNRGYNESYGCMFTSVIPCNVFGPYDNFSLESS 527
+ + ++E +G ++ P GP +L +S
Sbjct: 164 LAEKAAWEFSEKHGTNIVTIHPSTCLGPLLQPNLNAS 200
>At4g19280.1 68417.m02842 hypothetical protein
Length = 254
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 249 INDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETM---VHNGPPHS 386
I NI + C V ++ CLSTC + KT + + + + + N PP S
Sbjct: 29 IVQNIERQCFN-TVLSIIICLSTCFYFSKTCFSVFKLLLVCLFNPPPFS 76
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1)
(p125Nap1) (Membrane-associated protein HEM-2)
(Swiss-Prot:P55161) [Rattus norvegicus]
Length = 1339
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 353 INRICCLIRKYACRETRYNLLYI 285
++R+CCL+RKY Y L Y+
Sbjct: 478 MDRLCCLVRKYISAARGYALSYL 500
>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat. Gene
continues on the 3' end of BAC F19G10 gb|AF000657 gene
F19G10.21
Length = 703
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 404 AISKIGAMRWTIVYHSLINRIC 339
A S IGA++W V+H L+ R C
Sbjct: 329 ACSHIGALKWGKVFHCLVIRSC 350
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 253 FIDIFSLKKSKLCAIL*NSPPTIAAKCITWV 161
F+ FS+ K L A+L N +A+KC+ W+
Sbjct: 502 FMYFFSMYKYALDALLINEYSCLASKCLVWL 532
>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
embryonic flower 1 [Arabidopsis thaliana] GI:15430697
Length = 1096
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 450 SYGCMFTSVIPCNVFGPYDNFSLESSHVIPAL 545
S+GC + + + P DNFS ESS IPAL
Sbjct: 831 SFGCKHAAGVSSSSSRPIDNFSSESS--IPAL 860
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,769
Number of Sequences: 28952
Number of extensions: 365668
Number of successful extensions: 846
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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