Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31388
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 381 YAGIIQLLLVTQCESLCLSFKRKLDLQMSYCRNVFSRKVSIPPMT 515
           + G+    L T C+ L +S  +K+   + + +++  R     P+T
Sbjct: 119 FGGVRDHNLTTLCQELGISVVQKVSHTLYHLQDIIDRNGGRAPLT 163


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 320 YFLKHKHRYENYNVNLSYIPVRWYHP 397
           Y    KH  ++Y +N +  P   Y+P
Sbjct: 294 YRTDRKHTQQHYQMNQNMYPGEMYNP 319


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 320 YFLKHKHRYENYNVNLSYIPVRWYHP 397
           Y    KH  ++Y +N +  P   Y+P
Sbjct: 242 YRTDRKHTQQHYQMNQNMYPGEMYNP 267


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 320 YFLKHKHRYENYNVNLSYIPVRWYHP 397
           Y    KH  ++Y +N +  P   Y+P
Sbjct: 425 YRTDRKHTQQHYQMNQNMYPGEMYNP 450


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,151
Number of Sequences: 336
Number of extensions: 3838
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)