Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31388
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.7  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   8.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   8.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 390 IIQLLLVTQCESLCLSFKRKLDLQMSYCRNVFSRKVSIPPMTLRFSF 530
           I  LL++     L LS+    +++  + RN+F  K +  P+TLRF +
Sbjct: 615 IFDLLMMIFYRPLSLSYITT-EIRSPFERNLFHLKEAWSPVTLRFPY 660


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 328 KTQASL*KL*CEFIVHSSTLVSSNYCWSPNANPFV 432
           K Q S+ K+ CE+   S+ L+ ++  W+P+ + ++
Sbjct: 227 KKQMSIKKIPCEYNPSSTKLLITSTSWTPDEDIYI 261


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 406 NSNWMIPAYWNVR 368
           N NW IP YW  R
Sbjct: 44  NRNWQIPLYWQQR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,632
Number of Sequences: 5004
Number of extensions: 58537
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)