Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31388
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323...    30   2.3  

>09_03_0125 -
           12531409-12531442,12531577-12531668,12531747-12532337,
           12532454-12532789,12532899-12533156,12533867-12533971,
           12534625-12534702,12535464-12535542,12535649-12535723,
           12535828-12535946,12536042-12537106
          Length = 943

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 664 VISVDMSYAACLRLHFKQTYLLRVMIVVLLLFSYFG*KQNHYYMLKENLSVIGG-IDTFR 488
           VISV    A CL+L + +T LL   I   +  + F    +  Y+  E+  ++G  +D+F 
Sbjct: 355 VISVKNGRAICLKLAWTRTLLLGTCIKTSITINSFSLVDSKSYIKAEDKGLLGKFVDSFE 414

Query: 487 L 485
           L
Sbjct: 415 L 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,975
Number of Sequences: 37544
Number of extensions: 292459
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)