Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31388
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.76 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.76 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.76 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 322 IYIVLLLLKFNCKMTFVFY 266
           +Y+V L LK +C M F+ Y
Sbjct: 152 LYMVKLTLKLSCAMNFLIY 170


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 311 HNIYFLKHKHRYENYNVNLSYIPV 382
           +N Y   +K  Y+NY +N+  IPV
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 311 HNIYFLKHKHRYENYNVNLSYIPV 382
           +N Y   +K  Y+NY +N+  IPV
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 347 ENYNVNLSYIPVRWYHPITVGHPMRI 424
           EN+     Y+P RW  P T   P+ +
Sbjct: 431 ENFKDAKKYLPERWTTPTTPHSPLLV 456


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 236 LTMNCNKP*YIKYKCHFT 289
           L MN N+P Y+  KC  T
Sbjct: 152 LPMNRNRPAYLASKCALT 169


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 344 YENYNVNLSYIPV 382
           Y+NY +N+  IPV
Sbjct: 106 YKNYIINIEQIPV 118


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 344 YENYNVNLSYIPV 382
           Y+NY +N+  IPV
Sbjct: 117 YKNYIINIEQIPV 129


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 555 YPKYENNSNTTII 593
           YP+Y++ +N T+I
Sbjct: 461 YPRYDDATNATVI 473


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 344 YENYNVNLSYIPV 382
           Y+NY +N+  IPV
Sbjct: 347 YKNYIINIEQIPV 359


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 344 YENYNVNLSYIPV 382
           Y+NY +N+  IPV
Sbjct: 342 YKNYIINIEQIPV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,372
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)