Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31387
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    43   4e-06
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 464 PSGAGYDYKYGIIRYDNDVAPEG-YHYLYETENKILAEEAGKVENVGTENEGIKVKGFYE 640
           PSG G D    I     +V  +G Y   +ET N I  +E+G+ + V  E   +  +G   
Sbjct: 19  PSG-GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDS 76

Query: 641 YVGPDGVTYRVDYTADENGFRC*RSSH 721
           Y  PDG    + Y ADENGF+  + SH
Sbjct: 77  YTAPDGQQVSITYVADENGFQV-QGSH 102



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 624 SRDSTNTLAPTVSPTE*TTLLTKTGFVADGAHIPS 728
           S+ S +  AP       T +  + GF   G+HIP+
Sbjct: 71  SQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPT 105


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 376 HDGQGNNAGSLVSITKVFA 320
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 376 HDGQGNNAGSLVSITKVFA 320
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 376 HDGQGNNAGSLVSITKVFA 320
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,997
Number of Sequences: 438
Number of extensions: 3282
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)