Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31386
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    32   0.11 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.74 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.3  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   6.9  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   9.2  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   9.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.2  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   9.2  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 765 WYHWYFKRVTPGTVLFISWLWDIYIYIYSSKSMTSFSDFLCPTQSHLE*WSLVFL 601
           +Y    K++TP   +F +W+ + Y +  S+ S+    DF  PT ++   +S+ FL
Sbjct: 78  FYSTIIKKLTPWFTVFTTWVGEEYFFFASTLSILYMDDF--PTCAYFVIFSISFL 130


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = +2

Query: 488  FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 631
            F GLLS+    L+L   L+D   +Q  P   RR+F R+ + N   KK K  + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 534 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 677
           S S  +   +V+SS     + SS +P S+TP  +     SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 546 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 662
           +RC  A+S  SSESH +  ++++P S TPN T +  +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
 Frame = +2

Query: 392 YKGSLTTPPCAEAVT--WVIFSDY-LPISVFQM--DNFRGLLSNLNLPLVDNFRQLQPLF 556
           YKG   +    EA +  W  F +Y LP +V+++  D     +   +         L+  +
Sbjct: 245 YKGKCDSENIEEASSNSWKAFKEYKLPSNVYEVLHDTRCVKIQEDSESFWIMAHCLKMFY 304

Query: 557 GRRVFVRITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFDE*IYIYISHNQLINNTVPG 736
               F+ ++   P    +   Y K   +  +KSEND++ F +  Y+  +  +L N +V  
Sbjct: 305 DETEFLPLSGLLPDMNCSTQQYVKLQVIYKEKSENDILKFKK--YVQQTLKRL-NRSVEE 361

Query: 737 VTRLK 751
           +T L+
Sbjct: 362 ITDLE 366


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 759 HWYFKRVTPGTVLFISWLWDIYIYIYSSKSMTSFSDFLCPTQSHLE*WSLVFLNLGFFDV 580
           H+    +   T    + +   +  +YS K   S + FLCP   +L     +FL++  F V
Sbjct: 126 HYLLVAIIQSTTAIQAGILTAWYQLYSCKKEESSNKFLCPLSKYL---IYLFLSIHLFYV 182


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 726 VLFISW-LWDIYIYIYSSKSMTSFSDFLCPTQSHLE*WSLVFLNLGFFDVILT 571
           VL I W +  I       K   S+ +++   QSH E W  + + +G F ++L+
Sbjct: 108 VLLIIWSIITILTIDKKFKIKESYLEWIGENQSHSEIWGPIVIYVGLFILLLS 160


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 564 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 671
           +SSS ++  T SS   +++TP  T   T++  +TS+
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTST 205


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 152 PKEHAYRSMCAADPTVVLVTPVE-MQTIDAHTRCLGDLQRCKVDGSLLLC 6
           P+     S+C A+ T +   P+E  + I +H R  G L   +++GS  LC
Sbjct: 27  PQNKNSLSVCVAEFTALSEKPLEGFRKISSH-RIYGTLGLIELEGSNFLC 75


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 567 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMN 683
           S+SES Q   S+R  NS TP  T   + +  +++S  ++
Sbjct: 177 STSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,794
Number of Sequences: 5004
Number of extensions: 78677
Number of successful extensions: 230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)