Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31386
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0) 99 2e-21
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 61 9e-10
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15) 48 1e-05
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 32 0.45
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09) 31 1.0
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 29 3.2
SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3) 29 3.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0) 28 9.7
SB_13268| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.6e-15) 28 9.7
SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22) 28 9.7
>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
Length = 291
Score = 99 bits (238), Expect = 2e-21
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Frame = +2
Query: 41 GGPLDNEYEHRWSAFPLG*QEQQ*DRQHTLNDMRVPLEMHIIHRNKKYRNTAEAMQHPDG 220
G L + Y F +G + Q +H ++ ++ PLEMH++H N KY N + A DG
Sbjct: 109 GADLSSRYRLAQFHFHVGSSDIQ-GSEHHIHGVKYPLEMHLVHYNDKYPNASSAQGLLDG 167
Query: 221 LCVLAFFYQVVEFDAKLLXPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKG 400
L V++ ++ D L I+ NL + + + + + I+ DTE+FY Y G
Sbjct: 168 LAVISVLFESSSTDNPALNEIIDNLQNASYKDEEITVQNV-PVGKIIP-TDTEKFYRYNG 225
Query: 401 SLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNL-----PLVDNFRQLQPLFGR 562
SLTTPPC E V W++ IS Q+ FR + S LVDNFR Q L GR
Sbjct: 226 SLTTPPCFETVKWIVLKKTASISEKQLRQFRSVFSTSRQATKPNSLVDNFRPTQSLNGR 284
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 82.6 bits (195), Expect = 3e-16
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Frame = +2
Query: 119 QHTLNDMRVPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLXPIVKNLT 298
+H ++ +HI+ N KY N + A+ DGL V+ +V ++ L ++N+
Sbjct: 533 EHLIDGKAFAGAIHIVSYNTKYPNISAAVDKSDGLAVVGILLKVGT-ESAALKKFMENIG 591
Query: 299 AIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQ 478
++ N++ + L +L + FY Y+GSLTTP C E+VTW + ++ + +S Q
Sbjct: 592 SVTKVNTSDEFAQPAKLGDLLPS--NKNFYRYQGSLTTPGCQESVTWSVMANPITVSEAQ 649
Query: 479 MDNFRGLLSNLNLPLV-DNFRQLQPLFGRRV 568
+ RGL + ++ DNFR PL GR V
Sbjct: 650 LAILRGLKQKDGVAVIQDNFRNTMPLNGRAV 680
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 61.3 bits (142), Expect = 9e-10
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +2
Query: 329 LPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSN 508
L FSL S+L +T+ F+ YKGSLTTPPC E+VTW + IS Q+ R ++
Sbjct: 725 LAQEFSLGSLLPS-NTD-FFRYKGSLTTPPCYESVTWTVMKTKTTISHDQLMKLRSIMEK 782
Query: 509 LNL-PLVDNFRQ-LQPLFGRRV 568
+ + DN+R LQPL GR V
Sbjct: 783 DGVHKITDNYRHILQPLNGRTV 804
>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
Length = 338
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 383 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGL--LSNLNLPLVDNFRQ-LQPL 553
+Y+YKGS T P C E+V W+I + I +M R L S N L DNFR L PL
Sbjct: 176 YYSYKGSQTAPACHESVRWIIVKQPVDIYRDEMAYLRRLESSSGKNGKLCDNFRPILYPL 235
Query: 554 FGRRVF 571
GR V+
Sbjct: 236 NGRTVY 241
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 119 QHTLNDMRVPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFF 241
+H ++ R P E+ +I N KY N ++A DGL V+A F
Sbjct: 120 EHAVDGRRHPGEIQMIFHNTKYSNVSDAADKSDGLLVVAAF 160
>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 35 IFGGPLDNEYEHRWSAFPLG*QEQQ*DRQHTLNDMRVPLEMHIIHRNKK-YRNTAEAM-- 205
I GPL ++Y+ F G E++ +H ++ P EMHI+H N Y++ A AM
Sbjct: 2 ITSGPLSHKYKFAQFHFHWGKDEKE-GSEHRVDGKMYPSEMHIVHYNSDLYKDAASAMSS 60
Query: 206 QHPDGLCVLAFFYQ 247
+ DGLCVL F +
Sbjct: 61 DNKDGLCVLGVFLE 74
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 537 GSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGT-GLDTRSPKMTSS 671
G NRC V+ + SH RT S +R S T +G+ TR K T S
Sbjct: 433 GGDNRCTGRVTGTGSHTRTGSDKRTGSHTSSGSRHTSTRGNKCTGS 478
>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 395 KGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLN 514
K SL +A+TW + D +PI + F+ L+S L+
Sbjct: 125 KSSLRYKAITKAITWFLAKDMVPIYTVEKPGFKALISTLD 164
>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
Length = 252
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 32 YIFGGPLDNEYEHRWSAFPLG*QEQQ*DRQHTLNDMRVPLEMHIIHRNKKYRNTAEAMQH 211
Y+ GG L + LG ++ +H ++ R +HI++ N KY + + A
Sbjct: 182 YVHGGGLGANFTTAQFHMHLG-EDDTRGAEHLIDGQRNAACIHIVNYNTKYPDISTAANK 240
Query: 212 PDGLCVL 232
DGL V+
Sbjct: 241 SDGLAVI 247
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 287 KNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSL 406
+ ++ I+N L+ P SL + G D RFY YKGS+
Sbjct: 248 RTISDIQNIAYLLEAPGMLSLKRDM-GFDQMRFYCYKGSV 286
>SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3)
Length = 662
Score = 29.5 bits (63), Expect = 3.2
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +2
Query: 245 QVVEFDAK--LLXPIVKNLTAIEN-FNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTP 415
QV + D K LL P+ + AI+ STLQ+ ++LS + + K +L +P
Sbjct: 346 QVPDVDIKRTLLAPLQVSDVAIKRTLLSTLQVSDVGIKRTLLSTVQVS-YVAIKITLLSP 404
Query: 416 PCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLF 556
V + Y P+ V + N R LLS + +P V N R L F
Sbjct: 405 YSMSDVA-IKRIPYRPLQVSDVANKRTLLSTVQVPDVANKRTLLTSF 450
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3
Query: 567 SSSESHQRTLSSRRPNS----TTPNGTGLDTRSPKMTSST 674
+S S T SSRRP S T+ +GTG+ + PK +T
Sbjct: 919 TSPRSRPATSSSRRPTSRQSDTSEDGTGVSGKDPKSAETT 958
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/108 (18%), Positives = 47/108 (43%)
Frame = +2
Query: 389 TYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 568
+Y S + P A + + +D LP+ + + NF ++ + +L G++
Sbjct: 1238 SYNQSPVSAPPASQIPGLSHADNLPLDLDEQ-NFSKKKGLVDTD--SEYIRLAKAGGQKG 1294
Query: 569 FVRITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFDE*IYIYISHNQ 712
+ + + +++ HY++ +W H ++N+ I D H+Q
Sbjct: 1295 LLSMDKQADEYENKPKHYNRVNWFDHVHADNEEIPVDRVFQSSKRHHQ 1342
>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1264
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 558 VAVSSSESHQRTLS-SRRPNSTTPNGTGLDTRSPKMTSS 671
V +S S TLS SRR + TTPN SP++T +
Sbjct: 1180 VTLSDSRKQSVTLSDSRRQSVTTPNMRSSKVTSPQLTDN 1218
>SB_13268| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.6e-15)
Length = 642
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 575 RITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFDE*IYIYISHNQLINNTVPGVTRLKY 754
R+ +N +FK T L +S W ++G K N+ + + + I N ++ N +P + +L Y
Sbjct: 145 RVIERNKQFKWTFLQFSFWGFIG-KFFRNEELPYLGLMLRRILKN-IVVNVIPVLIKLGY 202
>SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22)
Length = 370
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 590 NPKFKKTKLHYSKWD--WVGHKKSENDVIDFDE 682
N KK +L YS D WV H+++ N +ID +E
Sbjct: 130 NDYVKKYRLQYSLDDESWVTHEENGNQIIDANE 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,776,542
Number of Sequences: 59808
Number of extensions: 602223
Number of successful extensions: 1606
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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