Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31382
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.0  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.6  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 288 CWWTSRSSLR 317
           CWWTS+ S R
Sbjct: 167 CWWTSKESAR 176


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 221 DQPLACPNS*PRSGTLSCNHIIS 153
           DQPLA P++  RS  L C+  +S
Sbjct: 142 DQPLAQPSASQRSTWLPCSAAVS 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,490
Number of Sequences: 5004
Number of extensions: 12551
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)