Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31382
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0780 - 5818597-5819181                                           26   5.7  
06_02_0009 + 10561257-10561751                                         26   7.6  

>02_01_0780 - 5818597-5819181
          Length = 194

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 248 LIAFSVPAPDQPL 210
           L+AF++P PDQPL
Sbjct: 24  LVAFTLPTPDQPL 36


>06_02_0009 + 10561257-10561751
          Length = 164

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 252 SGGKWCRRAGGRCWW 296
           + G WCR A G  WW
Sbjct: 5   AAGGWCRAAVGPWWW 19


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,368,531
Number of Sequences: 37544
Number of extensions: 106218
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)