Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31381
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    38   0.001
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.86 
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.6  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    26   4.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   6.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.0  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   8.0  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/108 (25%), Positives = 59/108 (54%)
 Frame = -3

Query: 707 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYD 528
           E+ +K+Q+ + ++ +E+QKQ+ R K LKK    EA   K   + ++  + E+R+      
Sbjct: 649 EQEKKQQELERQKREEKQKQKEREKKLKK-QQQEADREKMAREQRLREEEEKRI-LEERK 706

Query: 527 DKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKK 384
            ++KL + + E+  ++ LEK  +E+  +    ++A++  +F     K+
Sbjct: 707 RREKLDKEEEERRRRELLEKESEEKERRL---REAKIAAFFAPNQTKE 751



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
 Frame = -3

Query: 707 EERQKRQDYDLKE-LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSY 531
           EERQ+R+   L E   ++  +  R +  +K  + + L  +   K Q   + +R    +  
Sbjct: 610 EERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQK 669

Query: 530 DDKKKL----FEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKKKGELES 366
           + +KKL     E D EK+ ++   +  +E+      +++ +L K   ER  ++  E ES
Sbjct: 670 EREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKES 728


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 419  VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 526
            V+PF   R + P  A P R  P  + +GH   V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 452 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 559
           PS+++    S  S+SL +   +SFC+ +  CR+  R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 635  KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKLFEGDLE-KLNKDFLEK 468
            KALKK    + +  K+PP      V+ K++R VD  +  +  KL     E KL+   L +
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNE 1172


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 440  RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 535
            R + P    P R  P ++ +GH   +++C  R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = -3

Query: 662 ERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDT---RSYDDKKK---LFEGD 501
           ER+K + R K L+K L  E +  +   + + + + + ++D    + Y    K   L+   
Sbjct: 70  ERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR-KCQIDLMYIKEYPPLTKYVSLYAEG 128

Query: 500 LEKLNKDFLEKVWQERAEQFGGRQKARLP 414
             +  ++   ++W E  E+F   +K ++P
Sbjct: 129 TSEQTEETRNRIWAEMEERFNSGRKHKIP 157


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 705 REAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRR 526
           R+ KE     K A+   +A  EA  + E    R  H Q  AQ  +  +   A R    R 
Sbjct: 776 RQRKEI-FEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKERE 834

Query: 525 QKE 517
           Q+E
Sbjct: 835 QRE 837


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 674 KELKERQKQQLRHKALKKGLDPEALTG 594
           KE+K+RQ+ Q   K +++GL     +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 536 SYDDKKKLFEGDLEKLNKDFLEK 468
           S  DKKK+    +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,414
Number of Sequences: 5004
Number of extensions: 27738
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)